View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10685_low_9 (Length: 229)
Name: NF10685_low_9
Description: NF10685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10685_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 9 - 213
Target Start/End: Original strand, 38281643 - 38281847
Alignment:
| Q |
9 |
agaagcaaaggaaacggttcaagaatgtgtctctgagttcattagtttcattactggtgaagcttctgataagtgtcagagagaaaaaaggaaaacaatt |
108 |
Q |
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| T |
38281643 |
agaagcaaaagaaacggttcaagaatgtgtctctgagttcattagtttcattactggtgaagcttctgataagtgtcagagagaaaaaaggaaaacaatt |
38281742 |
T |
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| Q |
109 |
aatggtgatgatcttctttgggctatgacaacacttggttttgaaaactatgttggtccattgaaagtttatcttaataattatagggaaattgaagggg |
208 |
Q |
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| T |
38281743 |
aatggtgatgatcttctttgggctatgacaacacttggttttgaaaactatgttggtccattgaaagtttatcttaataattatagggaaattgaagggg |
38281842 |
T |
|
| Q |
209 |
aaaag |
213 |
Q |
| |
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||||| |
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| T |
38281843 |
aaaag |
38281847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 25 - 140
Target Start/End: Original strand, 39304573 - 39304688
Alignment:
| Q |
25 |
gttcaagaatgtgtctctgagttcattagtttcattactggtgaagcttctgataagtgtcagagagaaaaaaggaaaacaattaatggtgatgatcttc |
124 |
Q |
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| T |
39304573 |
gttcaagaatgtgtgtcggagttcataagttttgtcaccggggaagcatcggataaatgtcaaagagaaaaaagaaagacaatcaacggtgatgatatta |
39304672 |
T |
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| Q |
125 |
tttgggctatgacaac |
140 |
Q |
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|||||||||| ||||| |
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| T |
39304673 |
tttgggctattacaac |
39304688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 9 - 163
Target Start/End: Original strand, 9722701 - 9722855
Alignment:
| Q |
9 |
agaagcaaaggaaacggttcaagaatgtgtctctgagttcattagtttcattactggtgaagcttctgataagtgtcagagagaaaaaaggaaaacaatt |
108 |
Q |
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||||||||| ||||| || ||||| ||||| || ||||| || |||||||| ||||| |||||||||||||||||||||| ||| || ||||||||||| |
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| T |
9722701 |
agaagcaaaagaaacagtacaagagtgtgtatcagagtttatcagtttcataactggagaagcttctgataagtgtcagaaagagaagaggaaaacaatc |
9722800 |
T |
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| Q |
109 |
aatggtgatgatcttctttgggctatgacaacacttggttttgaaaactatgttg |
163 |
Q |
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| T |
9722801 |
aacggtgatgatcttctttgggctatgacaactcttggatttgaagattatgttg |
9722855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 56067963 - 56068107
Alignment:
| Q |
9 |
agaagcaaaggaaacggttcaagaatgtgtctctgagttcattagtttcattactggtgaagcttctgataagtgtcagagagaaaaaaggaaaacaatt |
108 |
Q |
| |
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|||||| || |||||| | ||||| ||||| || |||||||| || ||||| || |||||||| ||||| |||||||||| ||| || ||||| ||||| |
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| T |
56067963 |
agaagctaaagaaacgatgcaagagtgtgtatcagagttcataagcttcataacaggtgaagcatctgaaaagtgtcagaaagagaagaggaagacaata |
56068062 |
T |
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| Q |
109 |
aatggtgatgatcttctttgggctatgacaacacttggttttgaa |
153 |
Q |
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| T |
56068063 |
aacggtgatgatcttgtgtgggccatgactacacttggctttgaa |
56068107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 41866611 - 41866732
Alignment:
| Q |
16 |
aaggaaacggttcaagaatgtgtctctgagttcattagtttcattactggtgaagcttctgataagtgtcagagagaaaaaaggaaaacaattaatggtg |
115 |
Q |
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||||||||||| || |||||||| || |||||||| || ||||| || ||||||||||| ||||||||||||||||| ||| | || || || || || | |
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| T |
41866611 |
aaggaaacggtgcaggaatgtgtatcggagttcatcagcttcatcaccggtgaagcttccgataagtgtcagagagagaaacgaaagacgatcaacggcg |
41866710 |
T |
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| Q |
116 |
atgatcttctttgggctatgac |
137 |
Q |
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| T |
41866711 |
acgatctactttgggcgatgac |
41866732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 131
Target Start/End: Original strand, 22139957 - 22140015
Alignment:
| Q |
73 |
tctgataagtgtcagagagaaaaaaggaaaacaattaatggtgatgatcttctttgggc |
131 |
Q |
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| T |
22139957 |
tctgataagtgtcagagagagaagaggaagacgattaacggtgatgatttgctttgggc |
22140015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 131
Target Start/End: Original strand, 40539347 - 40539405
Alignment:
| Q |
73 |
tctgataagtgtcagagagaaaaaaggaaaacaattaatggtgatgatcttctttgggc |
131 |
Q |
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| T |
40539347 |
tctgataagtgtcagagagagaagaggaagacgattaacggtgatgatttgctttgggc |
40539405 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 23569766 - 23569839
Alignment:
| Q |
13 |
gcaaaggaaacggttcaagaatgtgtctctgagttcattagtttcattactggtgaagcttctgataagtgtca |
86 |
Q |
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| T |
23569766 |
gcaaaggaaacagttcaagagtgtgtttcagagttcatcagcttcatcaccggcgaagcctccgataagtgtca |
23569839 |
T |
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