View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10686_high_1 (Length: 497)
Name: NF10686_high_1
Description: NF10686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10686_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 451; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 14 - 480
Target Start/End: Original strand, 34374301 - 34374767
Alignment:
| Q |
14 |
agcagagatggtaaagaggatgatactattaaaggagatgtggccgcaactattaggtttaataaactatgttatttatctctttatggacttccaaagc |
113 |
Q |
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| T |
34374301 |
agcagagatggtaaagaggatgatactattaaaggagatgtggccgcaactattaggtttaataaactatgttatttatctctttctggacttccaaagc |
34374400 |
T |
|
| Q |
114 |
ttgtgaatatttgttcagattctgttgagttagaatatccatccttgagggaatttaagattgattattgtccaatgttgaagatatctctatcaccaac |
213 |
Q |
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| T |
34374401 |
ttgtgaatatttgttcagattctgttgagttagaatatccatccttgagggaatttaagattgatgattgtccaatgttgaagatatctctatcaccaac |
34374500 |
T |
|
| Q |
214 |
atatatccatgcaaatcaagacagcctcaacaatgtcacacattcaaaaaataaagaagatgataatattgaagtaaacaactcaagctcgtcaacttgc |
313 |
Q |
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| T |
34374501 |
atatatccatgcaaatcaagacagcctcaacaatgtcacacattcaaaaaataaagaagatgataatattgaagtaaacaactcaaactcgtcaacttgc |
34374600 |
T |
|
| Q |
314 |
ccccctgcagggtgtactcgttttctgtccaaattctttcataaaggaaacgcaaataagagaattaacaaggtaataatcaatttcatgacatgtattt |
413 |
Q |
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| T |
34374601 |
ccccctgcagggtgtactccttttctgtccaaattctttcataaaggaaacgcaaataagagaattaacaaggtaataatcaatttcatgacatgtattt |
34374700 |
T |
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| Q |
414 |
ttcaccgttatgcatgtagtctttgatataatattcagaagatattgataatatttcttgtattaac |
480 |
Q |
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| T |
34374701 |
ttcaccgttatgcatgtagtctttgatataatattcagaagatattgataatatttcttgtattaac |
34374767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 186
Target Start/End: Complemental strand, 34289946 - 34289864
Alignment:
| Q |
104 |
cttccaaagcttgtgaatatttgttcagattctgttgagttagaatatccatccttgagggaatttaagattgattattgtcc |
186 |
Q |
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|||||||||||||||| ||||||||||||||| || |||||||| ||||||||||| | ||||| | ||||| ||||||| |
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| T |
34289946 |
cttccaaagcttgtgagtatttgttcagattcactttggttagaatgtccatccttgaagcaatttgatattgaggattgtcc |
34289864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 61 - 161
Target Start/End: Complemental strand, 15894000 - 15893900
Alignment:
| Q |
61 |
aactattaggtttaataaactatgttatttatctctttatggacttccaaagcttgtgaatatttgttcagattctgttgagttagaatatccatccttg |
160 |
Q |
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||||||| | || |||||||| ||||||||||| |||| |||||||||||||||||| |||||||||||| | || ||||||||||||||||||| |
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| T |
15894000 |
aactattggtttcaataaactttgttatttatcactttcaagacttccaaagcttgtgagtatttgttcagaattactttggttagaatatccatccttg |
15893901 |
T |
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| Q |
161 |
a |
161 |
Q |
| |
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| |
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| T |
15893900 |
a |
15893900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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