View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10686_high_13 (Length: 241)
Name: NF10686_high_13
Description: NF10686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10686_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 13085821 - 13085585
Alignment:
| Q |
1 |
ctttaatgtttatgataagttagtgttatccttggnnnnnnnataataccggtattcaatttggtttattttcggttaattctctatctaactacacttt |
100 |
Q |
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| T |
13085821 |
ctttagtgtttatgataagttagtgttatccttggttcttttctaataccggtattcaatttggtttattttcggttaattctctatctacctacacttt |
13085722 |
T |
|
| Q |
101 |
ggatatataaaaagggttatgtattccatcttatattagataataatttattctagtctttattaagaaattcctaggaattctttatctttgtcaattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13085721 |
ggatatataaaaagggttatgtattccatcttatattaga---taatttattctagtctttattaagaaattcctaggaattctttatctttgtcaattt |
13085625 |
T |
|
| Q |
201 |
attacaaattctctatgtttctatagttattaagcctttg |
240 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| |
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| T |
13085624 |
attacaaattctctatatttctatagttattaagcctttg |
13085585 |
T |
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