View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10686_high_17 (Length: 226)
Name: NF10686_high_17
Description: NF10686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10686_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 14 - 211
Target Start/End: Complemental strand, 46130623 - 46130413
Alignment:
| Q |
14 |
agagaatagagcatgcatatagtaaaactaattcatcaggcatcaataagagttcccgaaggccaggcaatgctggtaagatctgaaaaggataacaaaa |
113 |
Q |
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| T |
46130623 |
agagaatagagcatgcatatagtaaaactaattcatcaggcatcaataagagttcccgaaggccaggcaatgctggtaagatctgaaaa-aataacaaaa |
46130525 |
T |
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| Q |
114 |
ccatttctaaattc--------------attatataggatatgctaaatttactgcacatgctatccttgcaaacttttcccaacctgatcctcaagagt |
199 |
Q |
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| T |
46130524 |
ccatttctaaattcattatatttattaaattatataggatatgctaaatttactgcacatgctatccttgcaaacttttcccaacctgatcctcaagagt |
46130425 |
T |
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| Q |
200 |
tagtggaagctt |
211 |
Q |
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|||||||||||| |
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| T |
46130424 |
tagtggaagctt |
46130413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 14 - 110
Target Start/End: Complemental strand, 46703438 - 46703342
Alignment:
| Q |
14 |
agagaatagagcatgcatatagtaaaactaattcatcaggcatcaataagagttcccgaaggccaggcaatgctggtaagatctgaaaaggataaca |
110 |
Q |
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| T |
46703438 |
agagaatagagcatgcatatagttgaactgattcatcaggcatcaataagagttcccgaaggccagacaatgctggtaagatctgaaaaggataaca |
46703342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 128 - 212
Target Start/End: Complemental strand, 46703277 - 46703193
Alignment:
| Q |
128 |
attatataggatatgctaaatttactgcacatgctatccttgcaaacttttcccaacctgatcctcaagagttagtggaagcttt |
212 |
Q |
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| T |
46703277 |
attatataggatatgctaaatttactgcacatgctatccttgcaaagttttcccaacctgatcctcaagagttagaggaggcttt |
46703193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 129 - 202
Target Start/End: Complemental strand, 46124486 - 46124413
Alignment:
| Q |
129 |
ttatataggatatgctaaatttactgcacatgctatccttgcaaacttttcccaacctgatcctcaagagttag |
202 |
Q |
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| T |
46124486 |
ttatataggatatgctaaatttactgcacatgctatccttgcaaatttttcccaacctgattctgaagagttag |
46124413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 110
Target Start/End: Complemental strand, 46124637 - 46124551
Alignment:
| Q |
24 |
gcatgcatatagtaaaactaattcatcaggcatcaataagagttcccgaaggccaggcaatgctggtaagatctgaaaaggataaca |
110 |
Q |
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| T |
46124637 |
gcatgcatatagtataacttcttcatcaggcatcaataagagctcctgaaggccagacaatgctggtagcatctgaaaaagataaca |
46124551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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