View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10686_high_5 (Length: 331)
Name: NF10686_high_5
Description: NF10686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10686_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 15 - 150
Target Start/End: Original strand, 502087 - 502222
Alignment:
| Q |
15 |
atatttatcctcataatttcataatatattgaaatgtttatgaattcgacaatggttaaatatgattaaaaattttaaaaaagttgttggtttattttca |
114 |
Q |
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| T |
502087 |
atatttatcctcataatttcataatatattgaaatgtttatgaattcgacaatggttaaatatgattaaaaatctaaaaaaagttgttggtttattttca |
502186 |
T |
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| Q |
115 |
ttttggatatgatcttttagggcccgtttgttatag |
150 |
Q |
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| T |
502187 |
ttttggatatgatcttttagggcccgtttgttatag |
502222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 202 - 330
Target Start/End: Original strand, 504213 - 504341
Alignment:
| Q |
202 |
caaggaaaacttcaaatnnnnnnnccgattgtacgtagatacatgattatgattatacactgcaaggctttacatctaactgtacatgattatgataata |
301 |
Q |
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| T |
504213 |
caaggaaaacttcaaatgaaaaaaccgattgtacgtagatacatgattatgattatacactgtaaggctttacatctaactgtacatgattatgataata |
504312 |
T |
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| Q |
302 |
atctaaattttatttgtgcttcttcttct |
330 |
Q |
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| T |
504313 |
atctaaattttatttgtgcttcttcttct |
504341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 15054393 - 15054465
Alignment:
| Q |
15 |
atatttatcctcataatttcataatatattgaaatgtttatgaattcgacaatggttaaatatgattaaaaat |
87 |
Q |
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| T |
15054393 |
atatttatcctcataattacaatatatattgaaatgtttatgaatttcacaatggtttaatatgattaaaaat |
15054465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 15101333 - 15101261
Alignment:
| Q |
15 |
atatttatcctcataatttcataatatattgaaatgtttatgaattcgacaatggttaaatatgattaaaaat |
87 |
Q |
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| T |
15101333 |
atatttatcctcgtaattacaaaatatattgaaatgtttatgaatttcacaatggtttaatatgattaaaaat |
15101261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 48299001 - 48298924
Alignment:
| Q |
19 |
ttatcctcataatttcataatatattgaaatgtttatgaattcgacaatggttaaatatgattaaaaattttaaaaaa |
96 |
Q |
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| T |
48299001 |
ttatcctcataattacagaaaatattgaaatatctatgatttcgacaatggttgcatatgattaaaaatgtaaaaaaa |
48298924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 12587098 - 12587163
Alignment:
| Q |
19 |
ttatcctcataatttcataatatattgaaatgtttatgaattcgacaatggttaaatatgattaaa |
84 |
Q |
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| T |
12587098 |
ttatcctcataattacagaaaatattgaaatgcctgtgaattcgacaatggttgcatatgattaaa |
12587163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 12574899 - 12574951
Alignment:
| Q |
19 |
ttatcctcataatttcataatatattgaaatgtttatgaattcgacaatggtt |
71 |
Q |
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|||||||||||||| || || |||||||||||| ||||||||||| ||||||| |
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| T |
12574899 |
ttatcctcataattacagaaaatattgaaatgtctatgaattcgataatggtt |
12574951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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