View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10686_low_12 (Length: 253)

Name: NF10686_low_12
Description: NF10686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10686_low_12
NF10686_low_12
[»] chr2 (2 HSPs)
chr2 (35-240)||(32988494-32988699)
chr2 (40-240)||(16220064-16220264)
[»] chr4 (3 HSPs)
chr4 (54-240)||(3992236-3992422)
chr4 (39-164)||(31808128-31808252)
chr4 (39-151)||(24905263-24905375)
[»] chr3 (1 HSPs)
chr3 (35-232)||(7310908-7311109)
[»] chr6 (1 HSPs)
chr6 (72-238)||(2321970-2322140)
[»] chr7 (2 HSPs)
chr7 (39-113)||(43057972-43058046)
chr7 (65-165)||(17648864-17648963)
[»] chr5 (1 HSPs)
chr5 (39-164)||(21182733-21182857)


Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 35 - 240
Target Start/End: Original strand, 32988494 - 32988699
Alignment:
Q  35 atggaaaatgcttaagtgcacgatagtatttttcgtgccaaatgcacgacaatgccaaactgcttttcttttaatttttatgtaccttaaaatgattcat 134  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32988494 atggaaaatgcttaagtgcacgataatatttttcgtgccaaatgcacgacaatgccaaactgcttttcttttaatttttatgtaccttaaaatgattcat 32988593  T
Q  135 ttagtgtgtaagtaattgatttgtttatgaggaatcacattaaggctcannnnnnnaccatttcaccaaaccactcaagtgtggccttcatgttgtctta 234  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||| |||||||||||||||||||    
T  32988594 ttagtgtgtaaataattgatttgtttatgaggaatcacattaaggctcatttttttgccatttcaccaaaccactcaagtatggccttcatgttgtctta 32988693  T
Q  235 tctctg 240  Q
    ||||||    
T  32988694 tctctg 32988699  T

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Target: chr2; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 40 - 240
Target Start/End: Complemental strand, 16220264 - 16220064
Alignment:
Q  40 aaatgcttaagtgcacgatagtatttttcgtgccaaatgcacgacaatgccaaactgcttttcttttaatttttatgtaccttaaaatgattcatttagt 139  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16220264 aaatgcttaagtgcacgataatatttttcgtgccaaatgcacgacaatgctaaactgcttttcttttaatttttatgtaccttaaaatgattcatttagt 16220165  T
Q  140 gtgtaagtaattgatttgtttatgaggaatcacattaaggctcannnnnnnaccatttcaccaaaccactcaagtgtggccttcatgttgtcttatctct 239  Q
     |||||||||||||||||||||||||||||||||||||||||||        ||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  16220164 atgtaagtaattgatttgtttatgaggaatcacattaaggctcatttttttgccacttcaccaaaccactcaagtatggccttcatgttgtcttatctct 16220065  T
Q  240 g 240  Q
    |    
T  16220064 g 16220064  T

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Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 54 - 240
Target Start/End: Original strand, 3992236 - 3992422
Alignment:
Q  54 acgatagtatttttcgtgccaaatgcacgacaatgccaaactgcttttcttttaatttttatgtaccttaaaatgattcatttagtgtgtaagtaattga 153  Q
    |||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3992236 acgataatatttttcgtgccaaatgcaagacaatgtcaaactgcttttcttttaatttttatgtaccttaaaatgattcatttagtgtgtaagtaattga 3992335  T
Q  154 tttgtttatgaggaatcacattaaggctcannnnnnnaccatttcaccaaaccactcaagtgtggccttcatgttgtcttatctctg 240  Q
    ||||||||||||||||||||||||||||||        ||| |||||||||||||| |||| ||||||||||||||||| |||||||    
T  3992336 tttgtttatgaggaatcacattaaggctcatttttttgccacttcaccaaaccactaaagtatggccttcatgttgtctcatctctg 3992422  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 164
Target Start/End: Original strand, 31808128 - 31808252
Alignment:
Q  39 aaaatgcttaagtgcacgatagtatttttcgtgccaaatgcacgacaatgccaaactgcttttcttttaatttttatgtaccttaaaatgattcatttag 138  Q
    |||||||| ||||| |||||||| |||||| ||||| |||||||||| | | ||| ||||||  ||||||||||| | |  ||||||||||| |  ||||    
T  31808128 aaaatgctaaagtgtacgatagtctttttcatgccacatgcacgacagtacaaaattgctttcattttaatttttttatgacttaaaatgatcccgttag 31808227  T
Q  139 tgtgtaagtaattgatttgtttatga 164  Q
    ||| || |||||| | ||||||||||    
T  31808228 tgtttaggtaatt-aattgtttatga 31808252  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 151
Target Start/End: Complemental strand, 24905375 - 24905263
Alignment:
Q  39 aaaatgcttaagtgcacgatagtatttttcgtgccaaatgcacgacaatgccaaactgcttttcttttaatttttatgtaccttaaaatgattcatttag 138  Q
    |||||||| |||||||||| ||| ||||| |||||| |||||||||| | | ||| ||||||  |||||||||||   |  ||||||||||| || ||||    
T  24905375 aaaatgctaaagtgcacgacagtcttttttgtgccacatgcacgacagtacaaaattgctttcattttaattttttgatgacttaaaatgatccagttag 24905276  T
Q  139 tgtgtaagtaatt 151  Q
    ||| || ||||||    
T  24905275 tgtttaggtaatt 24905263  T

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Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 35 - 232
Target Start/End: Original strand, 7310908 - 7311109
Alignment:
Q  35 atggaaaatgcttaagtgcacgatagtatttttcgtgccaaatgcacgacaatgccaaactgcttttcttttaatttttatgtaccttaaaatgattcat 134  Q
    |||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||    
T  7310908 atgggaaatacttaagtgcacgataatatttttcgtgccaaatgcacgacaatgccaaactgtttttcttttaatttttatgtaccttaaaatgattaat 7311007  T
Q  135 ----ttagtgtgtaagtaattgatttgtttatgaggaatcacattaaggctcannnnnnnaccatttcaccaaaccactcaagtgtggccttcatgttgt 230  Q
        ||||||||||||||||||||||||||||||||||||||||||| |||||        ||| ||||||||||||||||| | | |||||||||||||    
T  7311008 ttaattagtgtgtaagtaattgatttgtttatgaggaatcacattaaagctcatttttttgccacttcaccaaaccactcaaatattgccttcatgttgt 7311107  T
Q  231 ct 232  Q
    ||    
T  7311108 ct 7311109  T

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Target: chr6 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 72 - 238
Target Start/End: Complemental strand, 2322140 - 2321970
Alignment:
Q  72 ccaaatgcacgacaatgccaaactgcttttcttttaatttttatgtaccttaaaatgattcat----ttagtgtgtaagtaattgatttgtttatgagga 167  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    |||||||||||||||||||||||||||||||||    
T  2322140 ccaaatgcacgacaatgccaaacttcttttcttttaatttttatgtactttaaaatgattcatttacttagtgtgtaagtaattgatttgtttatgagga 2322041  T
Q  168 atcacattaaggctcannnnnnnaccatttcaccaaaccactcaagtgtggccttcatgttgtcttatctc 238  Q
    ||||||||||||||||        ||| |||||||||||||| |||| |||||||||||||||||||||||    
T  2322040 atcacattaaggctcatttttttgccacttcaccaaaccacttaagtatggccttcatgttgtcttatctc 2321970  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 43058046 - 43057972
Alignment:
Q  39 aaaatgcttaagtgcacgatagtatttttcgtgccaaatgcacgacaatgccaaactgcttttcttttaattttt 113  Q
    |||||||| |||||||||| ||| |||||||||||| |||||||||||| | ||| ||||||  |||||||||||    
T  43058046 aaaatgctcaagtgcacgacagtctttttcgtgccatatgcacgacaatacaaaattgctttcattttaattttt 43057972  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 165
Target Start/End: Complemental strand, 17648963 - 17648864
Alignment:
Q  65 tttcgtgccaaatgcacgacaatgccaaactgcttttcttttaatttttatgtaccttaaaatgattcatttagtgtgtaagtaattgatttgtttatga 164  Q
    |||||||||||||| | |||| | | ||| ||||||  ||||||||||| | |  | |||||||||  ||||||||| |||| |||||||||||||||||    
T  17648963 tttcgtgccaaatgtaggacagtacaaaa-tgctttcattttaatttttgtatgacataaaatgatgaatttagtgtctaagcaattgatttgtttatga 17648865  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 164
Target Start/End: Complemental strand, 21182857 - 21182733
Alignment:
Q  39 aaaatgcttaagtgcacgatagtatttttcgtgccaaatgcacgacaatgccaaactgcttttcttttaatttttatgtaccttaaaatgattcatttag 138  Q
    |||||||| |||||||||| ||| ||||||||| ||||||||||||| | | ||| ||||||  ||||||||||| | |  ||||||||||| |  ||||    
T  21182857 aaaatgctaaagtgcacgacagtctttttcgtgtcaaatgcacgacagtacaaaattgctttcattttaatttttttatgacttaaaatgatccggttag 21182758  T
Q  139 tgtgtaagtaattgatttgtttatga 164  Q
    ||| || |||||| | ||||||||||    
T  21182757 tgtttaggtaatt-aattgtttatga 21182733  T

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