View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10686_low_2 (Length: 413)
Name: NF10686_low_2
Description: NF10686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10686_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 10 - 396
Target Start/End: Complemental strand, 2041069 - 2040683
Alignment:
| Q |
10 |
agatgaaagaaaaaagagtttcgttcacttggttgcagctgtatgaggctaaggtcaaaaaagtggctcagactgagaatgaagcagttgatcgactcgc |
109 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2041069 |
agatgaaagaaaaaagagtttcattcacttggttgcagctgtatgaggctaaggtcaaaagagtggctcagactgagaatgaagcagttgatcgactcgc |
2040970 |
T |
|
| Q |
110 |
gcaacgctacaaggaagaagatgcaagaaaacaaagcaggaaaatcaaaacatgcaccaaacttccacccactgaaagaagattttgtggagataatgga |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2040969 |
gcaacgctacaaggaagaagatgcaagaaaacaaagcaggaaaatcaaaacatgcaccaaacttccacccagcgaaagaagattttgtggagataatgga |
2040870 |
T |
|
| Q |
210 |
tctggatacaacttgtcagtgaagagcagcaacataatgaagaagtcaaagaaggattttcttaatagcttggaggtcaaaaataacacagcaatgaaaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2040869 |
tctggatacaacttgtcagtgaagagcagcaacataatgaagaagtcaaagaaggattttcttaatagcttggaggtcaaaaataacacagcaatgaaaa |
2040770 |
T |
|
| Q |
310 |
ggagaggaattggttcaacttccaaatatctcactttttaagaaggaaattttagggtcaggcaatgaagataacaatgctatgtat |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2040769 |
ggagaggaattggttcaacttccaaatatctcactttttaagaacgaaattttagggtcaggcaatgaagataacaatgctatgtat |
2040683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 35 - 396
Target Start/End: Original strand, 1352600 - 1352961
Alignment:
| Q |
35 |
cacttggttgcagctgtatgaggctaaggtcaaaaaagtggctcagactgagaatgaagcagttgatcgactcgcgcaacgctacaaggaagaagatgca |
134 |
Q |
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||||||||||||| ||||||||||||| ||||||||| |||||| | |||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
1352600 |
cacttggttgcagttgtatgaggctaaagtcaaaaaaatggctcgggctgagaatgaagcagttgatcgactcacgaaacgctacaaggaagaagatgca |
1352699 |
T |
|
| Q |
135 |
agaaaacaaagcaggaaaatcaaaacatgcaccaaacttccacccactgaaagaagattttgtggagataatggatctggatacaacttgtcagtgaaga |
234 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1352700 |
agaaaacaaagcaggcaaatcaaaacatgcaccaaacttccacccagtgaaagaagattttgtggagataatggatctggatacaacttgtcagtgaaga |
1352799 |
T |
|
| Q |
235 |
gcagcaacataatgaagaagtcaaagaaggattttcttaatagcttggaggtcaaaaataacacagcaatgaaaaggagaggaattggttcaacttccaa |
334 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1352800 |
gcagcaacataatgaagaagtcaaagaaggattttcttaatagttttgaggtcaaaaatatcacagcaatgaaaaggagaggaattggttcaacttccaa |
1352899 |
T |
|
| Q |
335 |
atatctcactttttaagaaggaaattttagggtcaggcaatgaagataacaatgctatgtat |
396 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
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|
| T |
1352900 |
atatctcactttttaagaaggaaattttaggggcaggcaatgaggataacaatgctatgtat |
1352961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 10 - 196
Target Start/End: Original strand, 1357709 - 1357895
Alignment:
| Q |
10 |
agatgaaagaaaaaagagtttcgttcacttggttgcagctgtatgaggctaaggtcaaaaaagtggctcagactgagaatgaagcagttgatcgactcgc |
109 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1357709 |
agatgaaagaaaaaagagtttcattcacttggttgcagctgtatgaggctaaggtcaaaaaagtggctcagactgagaatgaagcagttgatcgactcgc |
1357808 |
T |
|
| Q |
110 |
gcaacgctacaaggaagaagatgcaagaaaacaaagcaggaaaatcaaaacatgcaccaaacttccacccactgaaagaagattttg |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | | ||||||||||||| |
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| T |
1357809 |
gcaacgctacaaggaagaagatgcaagaaaacaaagcaggcaaatcaaaacatgcaccaaacttccaccaagtaaaagaagattttg |
1357895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 35 - 216
Target Start/End: Original strand, 1364551 - 1364732
Alignment:
| Q |
35 |
cacttggttgcagctgtatgaggctaaggtcaaaaaagtggctcagactgagaatgaagcagttgatcgactcgcgcaacgctacaaggaagaagatgca |
134 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||| |||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1364551 |
cacttggttgcagttgtatgaggctaaagtcaaaaaaatggctcgggctgagaatgaagcagttgatcgactcacgcaacgctacaaggaagaagatgca |
1364650 |
T |
|
| Q |
135 |
agaaaacaaagcaggaaaatcaaaacatgcaccaaacttccacccactgaaagaagattttgtggagataatggatctggat |
216 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||| | | |||||||||||||||||||| ||||| |||||| |
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| T |
1364651 |
agaaaacaaagcaggcaaatcaaaacatgcaccaaacttccaccaagtaaaagaagattttgtggagatgatggacctggat |
1364732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 316 - 396
Target Start/End: Original strand, 1357941 - 1358020
Alignment:
| Q |
316 |
gaattggttcaacttccaaatatctcactttttaagaaggaaattttagggtcaggcaatgaagataacaatgctatgtat |
396 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||| | | |||||||| |||||||||| |||||||||||||||||| |
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| T |
1357941 |
gaattgtttcaacttccaagtatctcactttttaaggat-attttttaggggcaggcaatgaggataacaatgctatgtat |
1358020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 307
Target Start/End: Complemental strand, 10043832 - 10043776
Alignment:
| Q |
252 |
aagtcaaagaaggattttcttaatag-cttggaggtcaaaaataacacagcaatgaa |
307 |
Q |
| |
|
||||||||||| |||||||||||||| || ||||| ||||||| |||||||||||| |
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|
| T |
10043832 |
aagtcaaagaaagattttcttaatagtttttgaggtaaaaaatatcacagcaatgaa |
10043776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 10 - 307
Target Start/End: Original strand, 36717621 - 36717912
Alignment:
| Q |
10 |
agatgaaagaaaaaagagtttcgttcacttggttgcagctgtatgaggctaaggtcaaaaaagtggctcagactgagaatgaagcagttgatcgactcgc |
109 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||| |
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|
| T |
36717621 |
agatgaaagaaaaaagagtttcattcacttggttgcagctgtatgaggctaaggtaaaaaaaatggctcaggctgagaatgaagcagttgatcgactcgc |
36717720 |
T |
|
| Q |
110 |
gcaacgctacaaggaagaagatgcaagaaaacaaagcaggaaaatcaaaacatgcaccaaacttccacccactgaaagaagattttgtggagataatgga |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||| | | |||||||||||| |||||| || ||| |
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| T |
36717721 |
gcaacgctacaaggaagaagatgcaagaaaacaaagcaggaaaataaaaacatgcaccatagttccacctaataaaagaagattttctggagacaacgga |
36717820 |
T |
|
| Q |
210 |
tctggatacaacttgtcagtgaagagcagcaacataatgaagaagtcaaagaaggattttcttaatagcttggaggtcaaaaataacacagcaatgaa |
307 |
Q |
| |
|
|||||| ||| | ||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| ||||||| |||||||||||| |
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|
| T |
36717821 |
cctggat-caaat-----gtgaagagcagcaacataatgaagaagtcaaagaaagattttcttaatagttttgaggtaaaaaatatcacagcaatgaa |
36717912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 315 - 352
Target Start/End: Original strand, 36717977 - 36718014
Alignment:
| Q |
315 |
ggaattggttcaacttccaaatatctcactttttaaga |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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| T |
36717977 |
ggaattggttcaacttccaaatatctcactttttaaga |
36718014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 115; Significance: 3e-58; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 42 - 275
Target Start/End: Complemental strand, 24619969 - 24619733
Alignment:
| Q |
42 |
ttgcagctgtatgaggctaaggtcaaaaaagtggctcagactgagaatgaagcagttgatcgactcgcgcaacgctacaaggaagaagatgcaagaaaac |
141 |
Q |
| |
|
||||||||| || | |||||||| |||||| | |||||| | | ||||||||||||||||||| | ||||| |||| |||||||||||||||||||||| |
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|
| T |
24619969 |
ttgcagctgaataaagctaaggtaaaaaaaatagctcaggttaaaaatgaagcagttgatcgacccacgcaatgctaaaaggaagaagatgcaagaaaac |
24619870 |
T |
|
| Q |
142 |
aaagcaggaaaatcaaaacatgcaccaaacttccacccactgaaagaagattttgtggagataatggatctggatacaacttgtca---gtgaagagcag |
238 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||| | | |||||||||| ||||||| ||||||| || |||||||||| ||| ||||||||||| |
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|
| T |
24619869 |
aaagcaggaaaataaaaacatgcaccaaaattccacctagtaaaagaagattgtgtggaggtaatggacctagatacaacttctcaaatgtgaagagcag |
24619770 |
T |
|
| Q |
239 |
caacataatgaagaagtcaaagaaggattttcttaat |
275 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
24619769 |
caacataatgaagaaatcaaagaaatattttcttaat |
24619733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 55 - 122
Target Start/End: Complemental strand, 18179711 - 18179644
Alignment:
| Q |
55 |
aggctaaggtcaaaaaagtggctcagactgagaatgaagcagttgatcgactcgcgcaacgctacaag |
122 |
Q |
| |
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||||||||| ||| ||||||||||| |||||||||||||| ||||||||||| | ||||||||||| |
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|
| T |
18179711 |
aggctaagggaaaagaagtggctcaggctgagaatgaagcaattgatcgactcagggaacgctacaag |
18179644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 190 - 274
Target Start/End: Complemental strand, 18179290 - 18179206
Alignment:
| Q |
190 |
gattttgtggagataatggatctggatacaacttgtca---gtgaagagcagcaacataatgaagaagtcaaagaaggattttcttaa |
274 |
Q |
| |
|
|||||| || |||||||||| ||||||||||| ||||| |||||| ||||||||||||||||||||||||| || |||||||| |
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|
| T |
18179290 |
gattttttgtagataatggacctggatacaacgtgtcaaatgtgaag---agcaacataatgaagaagtcaaagatagaatttcttaa |
18179206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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