View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10686_low_20 (Length: 236)
Name: NF10686_low_20
Description: NF10686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10686_low_20 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 12 - 236
Target Start/End: Original strand, 188519 - 188743
Alignment:
| Q |
12 |
gatcttgtagtaacctaacctgaagggtgcgagtagcgaattcaacgccaatagtagacttggactcaagacaaaattcattgcgagtgaatcgggatag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
188519 |
gatcttgtagtaacctaacctgaagggtgcgagtagcgaattcaacgccaatagtagacttggactcaagacaaaattcattgcgagtgaatcgggatag |
188618 |
T |
|
| Q |
112 |
aagatttgatttaccaacaccagaatcgcctatcagtactaccttgaacagataatcgtattcctcctctccgactcttctacgactactcatcctcgac |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
188619 |
aagatttgatttaccaacaccagaatcgcctatcagtactaccttgaacagataatcgtattcttcctctccgactcttctacgactactcatcctcgac |
188718 |
T |
|
| Q |
212 |
acttttcttcctttcctttcctttt |
236 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
188719 |
acttttcttcctttcctttcctttt |
188743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 159
Target Start/End: Complemental strand, 31789513 - 31789395
Alignment:
| Q |
41 |
cgagtagcgaattcaacgccaatagtagacttggactcaagacaaaattcattgcgagtgaatcgggatagaagatttgatttaccaacaccagaatcgc |
140 |
Q |
| |
|
||||||||||||||||| ||||| || || ||||| |||||| || || || ||||| || || ||||||||||||||||||||||| || |||| |
|
|
| T |
31789513 |
cgagtagcgaattcaacaccaatggtggatttggattcaagattgaactcgtttttggtgaaacgagagagaagatttgatttaccaacaccggagtcgc |
31789414 |
T |
|
| Q |
141 |
ctatcagtactaccttgaa |
159 |
Q |
| |
|
| ||||| ||||||||||| |
|
|
| T |
31789413 |
cgatcagaactaccttgaa |
31789395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 174
Target Start/End: Original strand, 31090134 - 31090264
Alignment:
| Q |
44 |
gtagcgaattcaacgccaatagtagacttggactcaagacaaaattcattgcgagtgaatcgggatagaagatttgatttaccaacaccagaatcgccta |
143 |
Q |
| |
|
|||||||||||||| ||||| ||||| || || ||||||||||| ||||| || || || | || |||| ||| ||||| |||||||||||||| || | |
|
|
| T |
31090134 |
gtagcgaattcaacaccaatggtagatttagattcaagacaaaactcatttcgggtaaacctagagagaatattggattttccaacaccagaatctccaa |
31090233 |
T |
|
| Q |
144 |
tcagtactaccttgaacagataatcgtattc |
174 |
Q |
| |
|
| ||||| | ||||||||||||||| ||||| |
|
|
| T |
31090234 |
tgagtacaatcttgaacagataatcatattc |
31090264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 138
Target Start/End: Original strand, 24249400 - 24249509
Alignment:
| Q |
29 |
acctgaagggtgcgagtagcgaattcaacgccaatagtagacttggactcaagacaaaattcattgcgagtgaatcgggatagaagatttgatttaccaa |
128 |
Q |
| |
|
||||||||||| | || ||||||||||| ||||||||||| || ||||| | |||||| ||||| | ||| || | || |||| || |||||||||| |
|
|
| T |
24249400 |
acctgaagggttctggtggcgaattcaacaccaatagtagatttagactccaaacaaaactcatttctagtaaacctagagagaatgttggatttaccaa |
24249499 |
T |
|
| Q |
129 |
caccagaatc |
138 |
Q |
| |
|
|||||||||| |
|
|
| T |
24249500 |
caccagaatc |
24249509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University