View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10686_low_3 (Length: 383)

Name: NF10686_low_3
Description: NF10686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10686_low_3
NF10686_low_3
[»] chr4 (16 HSPs)
chr4 (20-374)||(3953133-3953487)
chr4 (151-370)||(4011528-4011747)
chr4 (151-370)||(4026285-4026504)
chr4 (153-370)||(4003051-4003268)
chr4 (278-374)||(4220678-4220774)
chr4 (283-353)||(3811872-3811942)
chr4 (283-370)||(3927089-3927176)
chr4 (283-370)||(3821445-3821532)
chr4 (283-370)||(3916095-3916182)
chr4 (168-237)||(3962664-3962733)
chr4 (278-374)||(3962527-3962623)
chr4 (170-237)||(4019344-4019411)
chr4 (170-237)||(3948184-3948251)
chr4 (278-374)||(3805728-3805824)
chr4 (278-374)||(4019452-4019548)
chr4 (181-237)||(3805630-3805686)
[»] chr5 (1 HSPs)
chr5 (60-370)||(13398798-13399109)


Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 20 - 374
Target Start/End: Complemental strand, 3953487 - 3953133
Alignment:
Q  20 gtaaacatataattaatatgcatgcatttaaaggttatttcttttttctattgaagcaaatgagctatgccagcatgcatacctattatctatgtatgaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3953487 gtaaacatataattaatatgcatgcatttaaaggttatttcttttttctattgaagcaaatgagctatgccggcatgcatacctattatctatgtatgaa 3953388  T
Q  120 acaagtaaatatatagctactagaaaatattgaaaatttatggagaggaaaaaactaaccgaaaatctaatgacttaattcctgacaaattagcagattt 219  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3953387 agaagtaaatatatagctactagaaaatattgaaaatttatggagaggaaaaaactaactgaaaatctaatgacttaattcctgacaaattagcagattt 3953288  T
Q  220 ttccaaagcttgtctccatttttgaacccttgacaaaatataannnnnnncatgctctacaagtgcattttcataactcttcttttgatgtcgtacatct 319  Q
    |||||||| ||||||||||||||||||||||||||||||||||       ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3953287 ttccaaagtttgtctccatttttgaacccttgacaaaatataatttttttcatgccctacaagtgcattttcataactcttcttttgatgtcgtacatct 3953188  T
Q  320 gtagggtctacctcgtagaaaacaggtattacaatctgtacatttttctctctgc 374  Q
    |||||  |||||||||||||||||||||||||||||||| |||||||||||||||    
T  3953187 gtaggacctacctcgtagaaaacaggtattacaatctgtccatttttctctctgc 3953133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 151 - 370
Target Start/End: Original strand, 4011528 - 4011747
Alignment:
Q  151 gaaaatttatggagaggaaaaaactaaccgaaaatctaatgacttaattcctgacaaattagcagatttttccaaagcttgtctccatttttgaaccctt 250  Q
    ||||||||||||  |||||| |||||||||||||||  ||||||||||||||||||||||||||||| | | |||||| ||||||||| | || ||| |     
T  4011528 gaaaatttatgggaaggaaagaactaaccgaaaatcagatgacttaattcctgacaaattagcagatgtgttcaaagcatgtctccatatctgcaccttg 4011627  T
Q  251 gacaaaatataannnnnnncatgctctacaagtgcattttcataactcttcttttgatgtcgtacatctgtagggtctacctcgtagaaaacaggtatta 350  Q
    ||| || || |        || | ||  ||| ||||||||||||||||||||||||||||||||||| |||||| |||||| | ||||||||||||||||    
T  4011628 gacgaattacaccttttttcaagttcagcaaatgcattttcataactcttcttttgatgtcgtacatttgtaggatctaccccatagaaaacaggtatta 4011727  T
Q  351 caatctgtacatttttctct 370  Q
    |||||||| ||| |||||||    
T  4011728 caatctgtccatatttctct 4011747  T

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Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 151 - 370
Target Start/End: Original strand, 4026285 - 4026504
Alignment:
Q  151 gaaaatttatggagaggaaaaaactaaccgaaaatctaatgacttaattcctgacaaattagcagatttttccaaagcttgtctccatttttgaaccctt 250  Q
    |||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||| | |||||| | ||||||| | || ||| |     
T  4026285 gaaaatttatggggaggaaagaactaaccgataatctaatgacttaattcctgacaagttagcagatttgttcaaagcatatctccatatctgcaccttc 4026384  T
Q  251 gacaaaatataannnnnnncatgctctacaagtgcattttcataactcttcttttgatgtcgtacatctgtagggtctacctcgtagaaaacaggtatta 350  Q
     || || |||         || | ||  ||| ||||||| |||||||||| ||| |||||||||| | |||||| |||||| | ||||||||||||||||    
T  4026385 aacgaactatgccttttttcaagttcagcaaatgcatttccataactcttttttagatgtcgtacgtttgtaggatctaccccatagaaaacaggtatta 4026484  T
Q  351 caatctgtacatttttctct 370  Q
    |||||||| ||| |||||||    
T  4026485 caatctgtccatatttctct 4026504  T

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Target: chr4; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 153 - 370
Target Start/End: Original strand, 4003051 - 4003268
Alignment:
Q  153 aaatttatggagaggaaaaaactaaccgaaaatctaatgacttaattcctgacaaattagcagatttttccaaagcttgtctccatttttgaacccttga 252  Q
    |||||||||| ||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||| | |||||| |||||||| || || ||| | ||    
T  4003051 aaatttatggggagaaaagaactaaccgaaaatctaatgacttaattccagacaaattagcagatttgttcaaagcgtgtctccagttctgcaccttgga 4003150  T
Q  253 caaaatataannnnnnncatgctctacaagtgcattttcataactcttcttttgatgtcgtacatctgtagggtctacctcgtagaaaacaggtattaca 352  Q
    ||||  |||        || | ||   ||  ||| ||| |||||||||||||||||||| ||||| |||||| |||||| | |||||||||||||  |||    
T  4003151 caaatgatatcttttttcaagttcagaaaacgcacttttataactcttcttttgatgtcttacatttgtaggatctaccccatagaaaacaggtaaaaca 4003250  T
Q  353 atctgtacatttttctct 370  Q
    ||| || ||| |||||||    
T  4003251 atccgtccatatttctct 4003268  T

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Target: chr4; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 278 - 374
Target Start/End: Original strand, 4220678 - 4220774
Alignment:
Q  278 acaagtgcattttcataactcttcttttgatgtcgtacatctgtagggtctacctcgtagaaaacaggtattacaatctgtacatttttctctctgc 374  Q
    |||| |||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||| |||||||||||  ||| ||| |||||||||||    
T  4220678 acaaatgcattttcataactcttcttttgatatcgtacatttgtaggatctacctcgtagaaaataggtattacaagttgtccatatttctctctgc 4220774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 283 - 353
Target Start/End: Original strand, 3811872 - 3811942
Alignment:
Q  283 tgcattttcataactcttcttttgatgtcgtacatctgtagggtctacctcgtagaaaacaggtattacaa 353  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||| |||||||||||    
T  3811872 tgcattttcataactcttcttttgatgtcgtacatctgtaggatctactccgtagaaaataggtattacaa 3811942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 283 - 370
Target Start/End: Complemental strand, 3927176 - 3927089
Alignment:
Q  283 tgcattttcataactcttcttttgatgtcgtacatctgtagggtctacctcgtagaaaacaggtattacaatctgtacatttttctct 370  Q
    |||||||||||||||| | ||||||||||||||||||||||| ||||||  ||||||||| ||||||||||| ||| ||| |||||||    
T  3927176 tgcattttcataactccttttttgatgtcgtacatctgtaggatctacccggtagaaaacgggtattacaatttgtgcatatttctct 3927089  T

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Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 283 - 370
Target Start/End: Original strand, 3821445 - 3821532
Alignment:
Q  283 tgcattttcataactcttcttttgatgtcgtacatctgtagggtctacctcgtagaaaacaggtattacaatctgtacatttttctct 370  Q
    ||||||||||||||||||||||||||||||||||| ||| || | |||  ||||||||| ||||| |||||||||| ||| |||||||    
T  3821445 tgcattttcataactcttcttttgatgtcgtacatttgtgggttttactccgtagaaaataggtaatacaatctgtccatatttctct 3821532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 283 - 370
Target Start/End: Complemental strand, 3916182 - 3916095
Alignment:
Q  283 tgcattttcataactcttcttttgatgtcgtacatctgtagggtctacctcgtagaaaacaggtattacaatctgtacatttttctct 370  Q
    |||||||||||||||| | ||||||||||||| ||||||||| ||||||  | ||||||||||||||||||| ||| ||| |||||||    
T  3916182 tgcattttcataactccttttttgatgtcgtatatctgtaggatctaccctgaagaaaacaggtattacaatttgtgcatatttctct 3916095  T

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Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 3962733 - 3962664
Alignment:
Q  168 aaaaaactaaccgaaaatctaatgacttaattcctgacaaattagcagatttttccaaagcttgtctcca 237  Q
    |||||||| ||||||||||| ||||||||||||| || |||||||||||||| | |||||| ||||||||    
T  3962733 aaaaaacttaccgaaaatctgatgacttaattccagataaattagcagatttgttcaaagcatgtctcca 3962664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 278 - 374
Target Start/End: Complemental strand, 3962623 - 3962527
Alignment:
Q  278 acaagtgcattttcataactcttcttttgatgtcgtacatctgtagggtctacctcgtagaaaacaggtattacaatctgtacatttttctctctgc 374  Q
    |||| |||||| ||||||||||| ||||||| || |||||||||||| |||||||  || |||| |||||| || |||||| ||| |||||||||||    
T  3962623 acaaatgcattatcataactcttgttttgatatcttacatctgtaggatctacctgataaaaaataggtataacgatctgtccatatttctctctgc 3962527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 237
Target Start/End: Original strand, 4019344 - 4019411
Alignment:
Q  170 aaaactaaccgaaaatctaatgacttaattcctgacaaattagcagatttttccaaagcttgtctcca 237  Q
    |||||| ||||||||||| ||||||||||||| || |||||||||||||| | |||||| ||||||||    
T  4019344 aaaacttaccgaaaatctgatgacttaattccagataaattagcagatttgttcaaagcatgtctcca 4019411  T

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Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 237
Target Start/End: Original strand, 3948184 - 3948251
Alignment:
Q  170 aaaactaaccgaaaatctaatgacttaattcctgacaaattagcagatttttccaaagcttgtctcca 237  Q
    |||||| ||||||||||  ||||||||||||| || ||||||||||||||||  ||||| ||||||||    
T  3948184 aaaacttaccgaaaatccgatgacttaattccagataaattagcagattttttgaaagcatgtctcca 3948251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 374
Target Start/End: Original strand, 3805728 - 3805824
Alignment:
Q  278 acaagtgcattttcataactcttcttttgatgtcgtacatctgtagggtctacctcgtagaaaacaggtattacaatctgtacatttttctctctgc 374  Q
    |||| |||||||||||||| |||| |||||| || |||||||| ||| |||| | | || |||| |||||| ||||||||| ||| ||||| |||||    
T  3805728 acaaatgcattttcataacccttcatttgatatcttacatctgcaggatctatcccataaaaaataggtataacaatctgtccatatttctttctgc 3805824  T

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Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 374
Target Start/End: Original strand, 4019452 - 4019548
Alignment:
Q  278 acaagtgcattttcataactcttcttttgatgtcgtacatctgtagggtctacctcgtagaaaacaggtattacaatctgtacatttttctctctgc 374  Q
    |||| ||||||||||||||||||| |||||| || |||||||| ||| |||| | | || |||| |||||  ||||| ||| ||| |||||||||||    
T  4019452 acaaatgcattttcataactcttcatttgatatcttacatctgcaggatctatcccataaaaaataggtacaacaatttgtccatatttctctctgc 4019548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 237
Target Start/End: Original strand, 3805630 - 3805686
Alignment:
Q  181 aaaatctaatgacttaattcctgacaaattagcagatttttccaaagcttgtctcca 237  Q
    ||||||| ||||||||||||| || |||||||||||||| |  ||||| ||||||||    
T  3805630 aaaatctgatgacttaattccagataaattagcagatttgttgaaagcatgtctcca 3805686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 9e-49; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 60 - 370
Target Start/End: Original strand, 13398798 - 13399109
Alignment:
Q  60 cttttttctattgaagcaaatgagcta-tgccagcatgcatacctattatctatgtatgaaacaagtaaatatatagctactagaaaatattgaaaattt 158  Q
    |||||| ||||| |||||||||||||| |||  || |||||  |||||||||||  ||||||||||||||||||||||||||| |||||||| ||||||     
T  13398798 ctttttgctatttaagcaaatgagctaatgctggcttgcattactattatctatacatgaaacaagtaaatatatagctactataaaatatttaaaattc 13398897  T
Q  159 atggagaggaaaaaactaaccgaaaatctaatgacttaattcctgacaaattagcagatttttccaaagcttgtctccatttttgaacccttgacaaaat 258  Q
    |||||||||||| |||||||||||||  | ||||  ||||||| || |||||||||||| |||  ||||  | ||||||| | ||||||   ||| || |    
T  13398898 atggagaggaaagaactaaccgaaaacttgatgatgtaattcccgataaattagcagatatttttaaagtgtttctccatatctgaacctcggacgaatt 13398997  T
Q  259 ataannnnnnncatgctctacaagtgcattttcataactcttcttttgatgtcgtacatctgtagggtctacctcgtagaaaacaggtattacaatctgt 358  Q
    |||        || | || |||| |||||||||||||||||||||||||||||||||||| || || |||||  |||||||||||||||||||||| |||    
T  13398998 atacctttttccaagttcaacaaatgcattttcataactcttcttttgatgtcgtacatcggtgggatctactccgtagaaaacaggtattacaatttgt 13399097  T
Q  359 acatttttctct 370  Q
     ||| |||||||    
T  13399098 ccatatttctct 13399109  T

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