View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10686_low_5 (Length: 355)
Name: NF10686_low_5
Description: NF10686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10686_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 344
Target Start/End: Complemental strand, 4567356 - 4567024
Alignment:
| Q |
17 |
aaatccagtgtggatatgaggatgatttgattgattactaatac----tagtaactaccaaacataaaataatgggaaatcttcaattaatggcttttgt |
112 |
Q |
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| T |
4567356 |
aaatctagtgtggatatgaggatgatttgattgattactaatacgtactagtaactaccaaacataaaataatggcaaatcttcaattaatggcttttgt |
4567257 |
T |
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| Q |
113 |
ttacatttaattaatctaaaacgtaaaaaatggattggagtatataatgatgatgatggttcgtgcacatgctctggcctatcatctttatatctggaaa |
212 |
Q |
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| T |
4567256 |
ttacatttaattaatctaaaacgtaaaaaatggattggagtatataatgatgatgatggttcgtgcacatgctctggcctatcatctttatatctggaaa |
4567157 |
T |
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| Q |
213 |
gtttcacatgcacctgacgtaactaatggacctacaacttattttgattaatatttcatgtcttcacagattaggttgattaggtattatgttatcatat |
312 |
Q |
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| T |
4567156 |
gtttcacatgcacctgacgtaactaatggacctacaacttattttgattaatatttcatgtcttcacagattaggttgattaggtattatgttatcatat |
4567057 |
T |
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| Q |
313 |
tatat-ttaagattatagggcctaaagtttctt |
344 |
Q |
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||||| ||||||| || ||||||||||||||| |
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| T |
4567056 |
tatatgttaagatcctatggcctaaagtttctt |
4567024 |
T |
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