View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10686_low_9 (Length: 316)
Name: NF10686_low_9
Description: NF10686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10686_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 20 - 309
Target Start/End: Complemental strand, 279891 - 279584
Alignment:
| Q |
20 |
atttatcccaactttgtacgaccaagtagattttgataaatccaaaacattgtttggattttcgattgaaaagagttttacaggacccccaacaatgcca |
119 |
Q |
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| T |
279891 |
atttatcccaactttgtacgaccaagtagattttgataaatccaaaacattgtttggattttcgattgaaaagagttttacaggacccccaacaatgcca |
279792 |
T |
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| Q |
120 |
gtttcttgcatatcaaagaacgcaccgtaatttgcatgaccaactgtaacacttaataaacttataatattggtaccttgatttaaagagatgttccctt |
219 |
Q |
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| T |
279791 |
gtttcttgcatatcaaagaacgcaccgtaatttgcatgacctactgtaacacttaataaacttataatattggtaccttgatttaaagagatgttccctt |
279692 |
T |
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| Q |
220 |
catgtataaa------------------accatgttgtgtacccgtaaaaaatccattaataaataaataaagaatatgacctgttgtattcacttgcac |
301 |
Q |
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| T |
279691 |
catgtataaaaccaggttgactaacggtaccatgttgtgtacccgtcaaaaatccattaataaataaataaagaatatgacctgttgtattcacttgcac |
279592 |
T |
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| Q |
302 |
ctttgctt |
309 |
Q |
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| T |
279591 |
ctttgctt |
279584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 24 - 208
Target Start/End: Complemental strand, 290332 - 290148
Alignment:
| Q |
24 |
atcccaactttgtacgaccaagtagattttgataaatccaaaacattgtttggattttcgattgaaaagagttttacaggacccccaacaatgccagttt |
123 |
Q |
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| T |
290332 |
atcccaactttgtatgaccaagtagattttgataaatccaaaacattgtttggatattcagttgaaatgagtttcgcaggaccgccaacaataccagttt |
290233 |
T |
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| Q |
124 |
cttgcatatcaaagaacgcaccgtaatttgcatgaccaactgtaacacttaataaacttataatattggtaccttgatttaaaga |
208 |
Q |
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| T |
290232 |
ctttcatatcaatgtacccactacaatttgatttgccaagtgtaacacttaacaaacttataatattggcaccttgtttcaaaga |
290148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 24 - 197
Target Start/End: Complemental strand, 24532059 - 24531886
Alignment:
| Q |
24 |
atcccaactttgtacgaccaagtagattttgataaatccaaaacattgtttggattttcgattgaaaagagttttacaggacccccaacaatgccagttt |
123 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||| ||||||| |||||| ||| ||||||||||||| ||||||| |
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| T |
24532059 |
atcccaactttgtatgaccaagtagattttgataaatccaaaacattgtctggatattcaattgaaatgagtttaacatgacccccaacaataccagttt |
24531960 |
T |
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| Q |
124 |
cttgcatatcaaagaacgcaccgtaatttgcatgaccaactgtaacacttaataaacttataatattggtacct |
197 |
Q |
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||| |||||||| |||| ||| |||||| | ||||| |||||||||||||||||||||||||||||||||| |
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| T |
24531959 |
ctttcatatcaatgaacccactacaatttgatttaccaagtgtaacacttaataaacttataatattggtacct |
24531886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 24 - 197
Target Start/End: Complemental strand, 24525387 - 24525213
Alignment:
| Q |
24 |
atcccaactttgtacgaccaagtagattttgataaatccaaaacattgtttggattttcgattgaaaagagttttacagga-cccccaacaatgccagtt |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||| |||||| ||| || ||||||||||| |||||| |
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| T |
24525387 |
atcccaactttgtacgaccaagtagattttgataaatccaaaacattgtctggatattcaattgaaatgagtttcacatgaccccccaacaataccagtt |
24525288 |
T |
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| Q |
123 |
tcttgcatatcaaagaacgcaccgtaatttgcatgaccaactgtaacacttaataaacttataatattggtacct |
197 |
Q |
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|||| |||||||| |||| ||| |||||| | ||||| |||||||||||||||||||||||||||||||||| |
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| T |
24525287 |
tctttcatatcaatgaacccactacaatttgatttaccaagtgtaacacttaataaacttataatattggtacct |
24525213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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