View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10687_low_1 (Length: 616)
Name: NF10687_low_1
Description: NF10687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10687_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 19 - 598
Target Start/End: Original strand, 32764710 - 32765289
Alignment:
| Q |
19 |
actagatggatcatttgcatatgtctctttctccttttgagggagagnnnnnnnctcctggcccacatcttgcaaactttgaataagtttttgagatata |
118 |
Q |
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| T |
32764710 |
actagatggatcatttgcatatgtctctttctccttttgagggagagaaaaaaactcctggcccacatcttgcaaactttgaataagtttttgagatata |
32764809 |
T |
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| Q |
119 |
ccatggtcagtgatcacaaagaaaccccactcagaagcagcttcattgattttcttcactaaaaggttatgtggttgagacaatgaaatcataggcacag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32764810 |
ccatggtcagtgatcacaaagaaaccccactcagaagcagcttcattgattttcttcactaaaaggttatgtggttgagacaatgaaatcataggcacag |
32764909 |
T |
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| Q |
219 |
taacaccctccatggcctttgtattctctggcctttcatttgctaagcgaatgaattgtggtggaagctcctttagctgattacaagctaaagtttgtac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32764910 |
taacaccctccatggcctttgtattctctggcctttcatttgctaagcgaatgaattgtggtggaagctcctttagctgattacaagctaaagtttgtac |
32765009 |
T |
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| Q |
319 |
tcttttcacttccattaattttaatgtgaatgatcaattatttttccttcaattcttatgatataagatcaatgtaggagagctatatatatttgcatgc |
418 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32765010 |
tcttttgacttccattaattttaatgtgaatgatcaattatttttccttcaattcttatgatataagatcaatgtaggagagctatatatatttgcatgc |
32765109 |
T |
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| Q |
419 |
aaccaaccattcaacaaagtatattcaaggaattataataccaaacatttagatgtgaaccgaataaagaaaatcactttacagtataaataaatggttt |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32765110 |
aaccaaccattcaacaaagtatattcaaggaattataataccaaacatttagatgtgaaccgaataaagaaaatcactttacagtataaataaatggttt |
32765209 |
T |
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| Q |
519 |
caaccatattactccttcaatttagacatgacatgttatcgtttttgcaaccaaattaatgcataacaacaataataaat |
598 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32765210 |
caaccatattactccttcaatttagacatgccatgttatcgtttttgcaaccaaattaaggcataacaacaataataaat |
32765289 |
T |
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