View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10687_low_3 (Length: 432)
Name: NF10687_low_3
Description: NF10687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10687_low_3 |
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| [»] scaffold0085 (1 HSPs) |
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Alignment Details
Target: scaffold0085 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 18 - 422
Target Start/End: Complemental strand, 52791 - 52387
Alignment:
| Q |
18 |
ataatgttattataaatatcaggaagcattcttttgaatccttgcacaatgatcttccattgaaaaacagcaaatcgcgaagttcaacataaaatataaa |
117 |
Q |
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| T |
52791 |
ataatattattataaatatcaggaagcattcctttgaatccttgcacaatgatcttccattaaaaaacagcaaatcgcgaagttcaacataaaatataaa |
52692 |
T |
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| Q |
118 |
atatgtcagtgtatactcgaatttgttgtttgtaagaactttctagggttactagttgatgaaggaaaagatagtagattataatatagtaaaagaattg |
217 |
Q |
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| T |
52691 |
atatgtcagtgtatactcgaatttgttgtttggaagaactttctagggttactagttgatgaaggaaaagatagtagattataatacagtaaaagaattg |
52592 |
T |
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| Q |
218 |
aattttgatatttgacacgactagaaagaaagaagnnnnnnntctcattccagttaatttgataagctggacatccggatcaaaaacttttgctatatgc |
317 |
Q |
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| T |
52591 |
aattttgatatttgacacgactagaaagaaagaagaaaaaaatttcattccaattaatttgataagctggacatccggatcaaaaacttttgctatatgc |
52492 |
T |
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| Q |
318 |
aagtcactgttgcaaaccaatgatatgatccaaaatggtcaattaccgaaagagcctcgggactgttttcttaaatgcttttccttcaagctttagtcgc |
417 |
Q |
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| T |
52491 |
aagtcactgttgcaaaccaatgatatgatccaaaatggtcaattaccgaaagagcctcgggactgttttcttaaatgcttttccttcaagctttagtcgc |
52392 |
T |
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| Q |
418 |
ctatg |
422 |
Q |
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| T |
52391 |
ctatg |
52387 |
T |
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Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 52171378 - 52171440
Alignment:
| Q |
22 |
tgttattataaatatcaggaagcattcttttgaatccttgcacaatgatcttccattgaaaaa |
84 |
Q |
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| T |
52171378 |
tgttattataaatataaggaagcattcctttgaatccttgcacaacgatcttccattgaaaaa |
52171440 |
T |
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