View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10687_low_4 (Length: 290)
Name: NF10687_low_4
Description: NF10687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10687_low_4 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 228641 - 228912
Alignment:
| Q |
1 |
agtgtaacagaagagagcagaataaaacgagtgaaaagagtaaaaagatgaatgaaagctattgaatgtagattaccgtttataaaatgcaatgctgctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
228641 |
agtgtaacagaagagagcagaataaaacgagtgaaaagagtaaaaagatgaatgaaagctattgaatgtagattaccgtttataaaatgcaatgctgctt |
228740 |
T |
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| Q |
101 |
tttgtacataaagagcaactcgtatcttttcctggtcaagatagttaaagcatatgcatagtgtgttaggaagacattaataaatgcatgtcatgcaacg |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
228741 |
tttgtacataaagagcaactcgtatcttctcctggtcaagatagttaaagcatatgcatagtgtgttagggagacattaataaatgcatgtcatgcaacg |
228840 |
T |
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| Q |
201 |
tttagaaagctatatgaaaatttatttaggtgacttagatctctaggactcattagggttgtgcaaaatagg |
272 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
228841 |
tttagaaagctatatgaaaatttatttaggtgacatagatctctaggactcattagggttgtgcaaaatagg |
228912 |
T |
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Back To:
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Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 14588737 - 14588466
Alignment:
| Q |
1 |
agtgtaacagaagagagcagaataaaacgagtgaaaagagtaaaaagatgaatgaaagctattgaatgtagattaccgtttataaaatgcaatgctgctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14588737 |
agtgtaacagaagagagcagaataaaacgagtgaaaagagtaaaaagatgaatgaaagctattgaatgtagattaccgtttataaaatgcaatgctgctt |
14588638 |
T |
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| Q |
101 |
tttgtacataaagagcaactcgtatcttttcctggtcaagatagttaaagcatatgcatagtgtgttaggaagacattaataaatgcatgtcatgcaacg |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
14588637 |
tttgtacataaagagcaactcgtatcttctcctggtcaagatagttaaagcatatgcatagtgtgttagggagacattaataaatgcatgtcatgcaacg |
14588538 |
T |
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| Q |
201 |
tttagaaagctatatgaaaatttatttaggtgacttagatctctaggactcattagggttgtgcaaaatagg |
272 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
14588537 |
tttagaaagctatatgaaaatttatttaggtgacatagatctctaggactcattagggttgtgcaaaatagg |
14588466 |
T |
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