View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10687_low_6 (Length: 206)
Name: NF10687_low_6
Description: NF10687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10687_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 175399 - 175571
Alignment:
| Q |
16 |
ataggaatataagaaaacaaaacttgtcagaccccctcggcctgtttgctctgctatctctcgatctggtgttagaaattctgtacaggacccctatcaa |
115 |
Q |
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| T |
175399 |
atagaaatataagaaaacaaaacttgtcagaccccctcggcctgtttgctctgctatctctcgatctgctgttagaaattctgtacaggacccctatcaa |
175498 |
T |
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| Q |
116 |
gtcactcttgacactcaactgtgtctccaaaccttttaattcctttatttctgatcccaaattcgccaatgat |
188 |
Q |
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| T |
175499 |
gtcactcttgacactcaactgtgtctccaaaccttttaattcctttatttctgatcccaaattcgccaatgat |
175571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 29 - 178
Target Start/End: Complemental strand, 1460457 - 1460308
Alignment:
| Q |
29 |
aaaacaaaacttgtcagaccccctcggcctgtttgctctgctatctctcgatctggtgttagaaattctgtacaggacccctatcaagtcactcttgaca |
128 |
Q |
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| T |
1460457 |
aaaacaaaacttgtcggaccccctcggcctgttttctttgttatcaccagatctagtgttagaaattttgtacggtctccctgtgaaatcactcttgaca |
1460358 |
T |
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| Q |
129 |
ctcaactgtgtctccaaaccttttaattcctttatttctgatcccaaatt |
178 |
Q |
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| T |
1460357 |
ctcaagtgtgtttccaagcccttgaattctttaatttctgatcctaaatt |
1460308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 27 - 184
Target Start/End: Complemental strand, 1471846 - 1471690
Alignment:
| Q |
27 |
agaaaacaaaacttgtcagaccccctcggcctgtttgctctgctatctctcgatctggtgttagaaattctgtacaggacccctatcaagtcactcttga |
126 |
Q |
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| T |
1471846 |
agaaaacaaaactcttcggacccc-tcggcctgttttctttgttatcgatcgatctggtgctagaaattctgtatggtctccctgtgaaatcactcttga |
1471748 |
T |
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| Q |
127 |
cactcaactgtgtctccaaaccttttaattcctttatttctgatcccaaattcgccaa |
184 |
Q |
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| T |
1471747 |
cactcaagtgtgtttccaagcccttgaatttcttaatttctgatcccaaatttgccaa |
1471690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 26 - 133
Target Start/End: Complemental strand, 1443030 - 1442923
Alignment:
| Q |
26 |
aagaaaacaaaacttgtcagaccccctcggcctgtttgctctgctatctctcgatctggtgttagaaattctgtacaggacccctatcaagtcactcttg |
125 |
Q |
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| T |
1443030 |
aagaaatcaaaactcgtcagacaccctcggcatgtttgctctgttatcacttgatctggtgttagaaatcttttacaggctccctttgaagtcgctattg |
1442931 |
T |
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| Q |
126 |
acactcaa |
133 |
Q |
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| T |
1442930 |
acactcaa |
1442923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 184
Target Start/End: Complemental strand, 371628 - 371558
Alignment:
| Q |
114 |
aagtcactcttgacactcaactgtgtctccaaaccttttaattcctttatttctgatcccaaattcgccaa |
184 |
Q |
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| T |
371628 |
aagtcactcttgacactcaagtgtgtctgcaagcccttgaattccattatttccgatcctaaattcgccaa |
371558 |
T |
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