View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10689_1 (Length: 631)
Name: NF10689_1
Description: NF10689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10689_1 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-172; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 261 - 611
Target Start/End: Original strand, 40690241 - 40690591
Alignment:
| Q |
261 |
tcttgtcttctctgcaccagctttggtggattgtcattactgagacaagtaacaaggttttggttttggattcaacatgatgatgatcaacaaacaaatt |
360 |
Q |
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| T |
40690241 |
tcttgtcttctctgcaccagctttggtggattgtcattactgagacaagtaacaaggttttggttttggattcaacatgatgatgatcaacaaacaaatt |
40690340 |
T |
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| Q |
361 |
tgtcttgatcatcaacattcaaatctagaaatatatttgttgtaagatattatattcttttgattcattatcaacttgaacaagcacctgataattttta |
460 |
Q |
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| T |
40690341 |
tgtcttgatcatcaacattcaaatctagaaatatatttgttgtaagatattatattcttttgattcattatcaacttgaacaagcacctgataattttta |
40690440 |
T |
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| Q |
461 |
caaaattcagttgtttattgaagaannnnnnnnaatttggtctatgaaaaggtctacacaacaactcatgtatagctcatgttgtgaatctttttcatat |
560 |
Q |
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| T |
40690441 |
caaaattcagttgtttattgaagaatttttttaattttgttctatgaaaaggcctacacaacaactcatgtatagctcatgttgtgtatctttttcatat |
40690540 |
T |
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| Q |
561 |
taattttttctatttgctctttttattctgtgccaaagaatgtgatgatgt |
611 |
Q |
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| T |
40690541 |
taattttttctatttgctcttttttttctgtgccaaagaatgtgatgatgt |
40690591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 4 - 179
Target Start/End: Original strand, 40689981 - 40690156
Alignment:
| Q |
4 |
caccgcgcgccggtgggaacatctgcagccaacactacactctctttgacaccaatggctttggaacctgatgaagatcatcctagaaagaaaaggaatg |
103 |
Q |
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| T |
40689981 |
caccgtgcaccggtgggaacttctgcagccaacaccacactctctttgacaacaatggctttggaacctgatgaagatcatcctagaaagaaaaggaatg |
40690080 |
T |
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| Q |
104 |
ttttgtctttggatttggatctcaaccttcctgcacctgaagatgatcatagagaatctaagtttgcctttgcttc |
179 |
Q |
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| T |
40690081 |
ttttgtctttggatttggatctcaaccttcctgcacctgaagatgatcatagagaatctaagtttgcctttgcttc |
40690156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 173
Target Start/End: Original strand, 34714363 - 34714448
Alignment:
| Q |
85 |
cctagaaagaaaaggaatgttttgtctttggatttggatctcaaccttcctgcacctgaagatgatcatagagaatctaagtttgcctt |
173 |
Q |
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| T |
34714363 |
cctagaaagaaaatgaatgtct---ctttggatttggatctcaaccttcctgcagcttaagaagatcaaagagagttcaagtttgcctt |
34714448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 110 - 161
Target Start/End: Original strand, 34710689 - 34710740
Alignment:
| Q |
110 |
ctttggatttggatctcaaccttcctgcacctgaagatgatcatagagaatc |
161 |
Q |
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| T |
34710689 |
ctttggatttggatctcaaccttcctgcagcttaagaagatcaaagagaatc |
34710740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 261 - 334
Target Start/End: Original strand, 34710777 - 34710848
Alignment:
| Q |
261 |
tcttgtcttctctgcaccagctttggtggattgtcattactgagacaagtaacaaggttttggttttggattca |
334 |
Q |
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| T |
34710777 |
tcttgttttctgtgcacctgcttgggtggattgtcattact--gacaagtgacaaagttttagtttgggattca |
34710848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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