View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10689_11 (Length: 377)
Name: NF10689_11
Description: NF10689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10689_11 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 12 - 377
Target Start/End: Complemental strand, 38751891 - 38751526
Alignment:
| Q |
12 |
atgaagcactgacaataatttgagaaaatgtaacaacagaatacagtcacatgtatcgatgttgtgttggtgtctgatgcgtgtcttcaacgtgaagtgt |
111 |
Q |
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| T |
38751891 |
atgaagcactgacaataatttgagaaaatgtaacaacggaatacagtcacatgtatcgatgttgtgttggtgtctgatgcgtgtcttcaacgtgaagtgt |
38751792 |
T |
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| Q |
112 |
gctcacaaacacatacttacacttctcctcttcttgcagggtttcaagaaggttgttgctgataggtgggagtttgcaaatgattacttcaaaaaaggag |
211 |
Q |
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| T |
38751791 |
gctcacaaacacatacttacacttctcctcttcttgcagggtttcaagaaggttgttgctgataggtgggagtttgcaaatgattacttcaaaaaaggag |
38751692 |
T |
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| Q |
212 |
ctaagcatttgttatgtgaaatccacaggagaaaaacccctcaacactatcaacaacaatactacgaacaatcgccacaaatttttcaaccagatgaaaa |
311 |
Q |
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| T |
38751691 |
ctaagcatttgttatgtgaaatccacaggagaaaaacccctcaacactatcaacaacaatactacgaacaatcgccacaaatttttcaaccagatgaaag |
38751592 |
T |
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| Q |
312 |
tatatgctggattgattctccattaccatctcctaaatcaaacaccgatatcttaacagcactttc |
377 |
Q |
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| T |
38751591 |
tatatgctggattgattctccattaccatctcctaaatcaaacaccgatatcttaacagcactttc |
38751526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 12 - 362
Target Start/End: Original strand, 3020547 - 3020903
Alignment:
| Q |
12 |
atgaagcactgacaataatttgagaaaatgtaacaacagaatacagtcacatgtatcgatgttgtgttggtgtctgatgcgtgtcttcaacgtgaagtgt |
111 |
Q |
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| T |
3020547 |
atgaagcactcataataatttgagaaaatggaacagcggaataaagtcacatgtatcaatgtcgtgttggtgtctgatgcgtgtcttcgacg---agtgt |
3020643 |
T |
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| Q |
112 |
gctcacaaacacatactt---------acacttctcctcttcttgcagggtttcaagaaggttgttgctgataggtgggagtttgcaaatgattacttca |
202 |
Q |
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| T |
3020644 |
gctcacaaacatatacttcacaaacatacacttctcctcttcttgtagggtttcaagaaggttgttgctgataggtgggagtttgcaaatgaatacttca |
3020743 |
T |
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| Q |
203 |
aaaaaggagctaagcatttgttatgtgaaatccacaggagaaaaacccctcaacactatcaacaacaatactacgaacaatcgccacaaatttttcaacc |
302 |
Q |
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| T |
3020744 |
aaaaaggagctaagcatctattatgtgaaatccacagaagaaaaactcctcaacactatcaacaacaatactatgaacaatcaccacaaatttttcaacc |
3020843 |
T |
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| Q |
303 |
agatgaaaatatatgctggattgattctccattaccatctcctaaatcaaacaccgatat |
362 |
Q |
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| T |
3020844 |
agatgaaagtatctgttggattgattctccattaccatctcctaaatcaaacactgatat |
3020903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 248
Target Start/End: Complemental strand, 46926615 - 46926545
Alignment:
| Q |
178 |
tgggagtttgcaaatgattacttcaaaaaaggagctaagcatttgttatgtgaaatccacaggagaaaaac |
248 |
Q |
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| T |
46926615 |
tgggagtttgcaaatgaatatttcaaaaaaggagaaaagcatttgctttgtgagattcatagaagaaaaac |
46926545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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