View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10689_12 (Length: 352)
Name: NF10689_12
Description: NF10689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10689_12 |
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Alignment Details
Target: chr2 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 196 - 323
Target Start/End: Original strand, 4194429 - 4194556
Alignment:
| Q |
196 |
aaccaagaaggtctctacctacaccaattcaaactctccttagacgatccatcctcttccttatccacatggaacaacaacaacccaacaccttgtacct |
295 |
Q |
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| T |
4194429 |
aaccaagaaggtctctacctacaccaattcaaactctccttagacgatccatcctcttccttatccacatggaacaacaacaacccaacaccttgtacct |
4194528 |
T |
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| Q |
296 |
ggtcaggcataacctgcgacccaacaaa |
323 |
Q |
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| T |
4194529 |
ggtcaggcataacctgcgacccaacaaa |
4194556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 59
Target Start/End: Original strand, 4194266 - 4194301
Alignment:
| Q |
24 |
catcatcaatcactaccaataccattgtttactatg |
59 |
Q |
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||||| |||||||||||||||||||||||||||||| |
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| T |
4194266 |
catcaacaatcactaccaataccattgtttactatg |
4194301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 246
Target Start/End: Complemental strand, 34924977 - 34924927
Alignment:
| Q |
196 |
aaccaagaaggtctctacctacaccaattcaaactctccttagacgatcca |
246 |
Q |
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| T |
34924977 |
aaccaagaaggtttatacctctaccaattcaaactcaccttagacgatcca |
34924927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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