View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10689_3 (Length: 548)
Name: NF10689_3
Description: NF10689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10689_3 |
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Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 29 - 515
Target Start/End: Complemental strand, 5402209 - 5401724
Alignment:
| Q |
29 |
agcatcacaaatcttaatatatagcattacaccaagcata----gtatatagtgaaaataaaatgaactggtggttggctagagcaactggtgatcatcc |
124 |
Q |
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| T |
5402209 |
agcatcacaaatcttaata----gcattacaccaagcatatatagtatatagtgaaaataaaatgaactggtggttggctagagcaactggtgatcatcc |
5402114 |
T |
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| Q |
125 |
tggcaaggcaagttcttacgaacaaaatttgttctatatttttcattttaatgctaattaatttgatatatctattatgaatgacaataagcactgggca |
224 |
Q |
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| T |
5402113 |
tggcaaggcaagttcttacgaactaaatttgttctatatttttcattttaatgctaattaatttgatatatctattatgaatgacaataaacactgggca |
5402014 |
T |
|
| Q |
225 |
atgaggnnnnnnnnttgatgtatcaactggcaaagaaagttcttatcttagtacacactacgtttaaccgtagctccgtgtttcacaattttccttcatt |
324 |
Q |
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| T |
5402013 |
acgaggaaaaaaaattgatgtatcaactggcaaagaaagttctta-----gtacacactacgtttaaccgtagctccgtgtttcacaattttccttcatt |
5401919 |
T |
|
| Q |
325 |
aatttttcttttcaactaacgtgaattcattcattcatg----tacacagatcacaaaattcaaggaagcaccacgaaacgtccaaaatgtagcattgat |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5401918 |
aatttttcttttcaactaacgtgaattcattcattcatgcatgtacacagatcacaaaattcaaggaagcaccacgaaacgtccaaaatgtagcattgat |
5401819 |
T |
|
| Q |
421 |
tataggcgtaacaggaattgtgggaaatagtctagcagagatcctacctctaaaagacacaccaggtggaccatggaaggtttatggcgtggctc |
515 |
Q |
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| T |
5401818 |
tataggcgtaacaggaattgtgggaaatagtctagcagagatcctacctctaaaagacacaccagttggaccatggaaggtttatggcgtggctc |
5401724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 368 - 515
Target Start/End: Complemental strand, 5395724 - 5395577
Alignment:
| Q |
368 |
cagatcacaaaattcaaggaagcaccacgaaacgtccaaaatgtagcattgattataggcgtaacaggaattgtgggaaatagtctagcagagatcctac |
467 |
Q |
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||||| ||| ||||||||||||||||| ||| | |||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| |||| |
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| T |
5395724 |
cagattacagaattcaaggaagcaccaggaagcttccaaaatgtagcattgattataggcgtgacgggaattgtgggaaatagcctagcagagattctac |
5395625 |
T |
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| Q |
468 |
ctctaaaagacacaccaggtggaccatggaaggtttatggcgtggctc |
515 |
Q |
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| T |
5395624 |
ctctcgacgacacaccaggtggtccatggaaggtttatggtgtggctc |
5395577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 368 - 515
Target Start/End: Complemental strand, 5391914 - 5391767
Alignment:
| Q |
368 |
cagatcacaaaattcaaggaagcaccacgaaacgtccaaaatgtagcattgattataggcgtaacaggaattgtgggaaatagtctagcagagatcctac |
467 |
Q |
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||||| ||| ||||||||||| ||||||||| | |||||||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||| ||| |
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| T |
5391914 |
cagattacagaattcaaggaatcaccacgaagcttccaaaatgtagcattaattataggcgtgacgggaattgtgggaaatagcctagcagagattttac |
5391815 |
T |
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| Q |
468 |
ctctaaaagacacaccaggtggaccatggaaggtttatggcgtggctc |
515 |
Q |
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|||| | |||||||||||||| ||||||||||||||||||||||||| |
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| T |
5391814 |
ctctcgacgacacaccaggtggtccatggaaggtttatggcgtggctc |
5391767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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