View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10689_5 (Length: 482)
Name: NF10689_5
Description: NF10689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10689_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 21 - 482
Target Start/End: Original strand, 41066375 - 41066836
Alignment:
| Q |
21 |
ccatgaaagtagagagagaccttcttggtttagagaagaaatgaatggaaacaaggagatagtgagaaacaagataagaaaatttaatgcattgtttgac |
120 |
Q |
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| T |
41066375 |
ccatgaaagtagagagagaccttcttggtttagagaagaaatgaatggaaacaaggagatagtgagaaacaagataagaaaatttaatgcattgtttgac |
41066474 |
T |
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| Q |
121 |
atgatgagttggttttctgctactgttctatctcatctaaaacatagcagcagtactattttttctgtgttactactctctatttttctctgtatcattt |
220 |
Q |
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| T |
41066475 |
atgatgagttggttttctgctactgttctatctcatctaaaacatagcagcagtactagtttttctatgttactactctctatttttctctttatcattt |
41066574 |
T |
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| Q |
221 |
gatacttgttggatattaaaattctcgtatcttcacttaaagttactgataaagatgtagacagttcttttatccttcatcatcaaactatatatagttc |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41066575 |
gatacttgttggatattaaaattctcgtatcttcacttaaagttactgataaagatgtagacagttcttttatccttcatcatcaaactatatatagttc |
41066674 |
T |
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| Q |
321 |
tcttttgtaatggatttacagcaaaggttaaagaaaaggacaaagtggaagcattgtacaagcatgtgtggaacttcagtacgtgcggaagatatataaa |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41066675 |
tcttttgtaatggatttacagcaaaggttaaagaaaaggacaaagtggaagcattgtacaagcatgtgtggaacttcagtacgtgcggaagatatataaa |
41066774 |
T |
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| Q |
421 |
agaaatgactcatatagttcgccccttaaagttttaagtaaagatgttgtgttcgtttctct |
482 |
Q |
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| T |
41066775 |
agaaatgactcatatagttcgccccttaaagttttaagtaaagatgttgtgttcgtttctct |
41066836 |
T |
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