View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10689_7 (Length: 476)
Name: NF10689_7
Description: NF10689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10689_7 |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 21 - 455
Target Start/End: Complemental strand, 28939541 - 28939107
Alignment:
| Q |
21 |
ggaagcatcccagataccccttctggtagatcaatgtacactgatacttcagtcatgggtgctgatttccgtgccttcgttgagatcgtgtttcagaacc |
120 |
Q |
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| T |
28939541 |
ggaagcatcccagataccccttctggtagatcaatgtacactgatacttcagtcatgggtgctgatttccgtgccttcgttgagatcgtgtttcagaacc |
28939442 |
T |
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| Q |
121 |
atgaaagtatcgttcaaagttggcacattgatggatactcattttgggttgtcgggtaagaattcacaaccacattgtttatttccatcaattttttatc |
220 |
Q |
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| T |
28939441 |
atgaaagtatcgttcaaagttggcacatcgatggatactcattttgggttgtcgggtaagaattcacaaccacattgtttatttccatcaattttttatc |
28939342 |
T |
|
| Q |
221 |
caggtttaatcactatgcgatgaagtgtaaaaagtgttgcacacatctaattgatcatagtgagatatgattgaatacatgtgtaaannnnnnnnacaac |
320 |
Q |
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| T |
28939341 |
caggtttaatcactatgcgacgaagtgtaaaaagtgttgcacacatctaatcgatcatagtgagatatgattgaatacatgtgtaaattttttttacaac |
28939242 |
T |
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| Q |
321 |
atcatgaaacatttagtatttttcactctgaactaattaaatttctaatgcagaatggatggtggtgtatggacgcctaatagtcgtaaccaatacaacc |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28939241 |
atcatgaaacatttagtatttttcactctgaactaattaaatttctaatgcagaatggatggtggtgtatggacgcctaatagtcgtaaccaatacaacc |
28939142 |
T |
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| Q |
421 |
taagagatgctgtgtctaggagcacaacacaggtt |
455 |
Q |
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| T |
28939141 |
taagagatgctgtgtctaggagcacaacacaggtt |
28939107 |
T |
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