View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10689_8 (Length: 442)
Name: NF10689_8
Description: NF10689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10689_8 |
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Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 2145667 - 2146097
Alignment:
| Q |
1 |
catactacttcaaaaaagtagatattttcatgctttggacttggaggatttacgcctatagaattagaacttagtataagtttttgcaatttatttatac |
100 |
Q |
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| T |
2145667 |
catactacttcaaaaaagtagatattttcatgctttggacttggaggatttacgcctatagaattagaacttagtataagtttttgcaatttatttatat |
2145766 |
T |
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| Q |
101 |
atgtatattatcaacaaaaacatatataaatgtgttatagaaagttacctggcatattatcaaagtaaccgtaacaagtaacatcaagacccctatccga |
200 |
Q |
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| T |
2145767 |
atgtatattatcaacaaaaacatatataaatgtgttatagaaagttacctggcatattatcaaagtaaccgtaacaagtaacatcaagacccctatccga |
2145866 |
T |
|
| Q |
201 |
tgcaaagccacaatattgtggtgctttgcaaccacaaagaggtgtattccatcgcaacattaaattagagtaaagtccttccatgataaccattggttga |
300 |
Q |
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| T |
2145867 |
tgcaaagccacaatattgtggtgctttgcaaccacaaagaggtgtattccatcgcaacattaaattagagtaaagtccttccatgataaccattggttga |
2145966 |
T |
|
| Q |
301 |
ccggatttatctttaactggaaccttagcagatccaatctcattgataaggctagactccataaattaccaagaagtgattgtaacgcatacatgatcaa |
400 |
Q |
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| T |
2145967 |
ccggatttatctttaactggaaccttagcagatccaatctca-tga-cacgatggactccacaaattaccaagaagtgattgtaacgcatacatgatcaa |
2146064 |
T |
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| Q |
401 |
atagttgtcattgcttagacaaggtatattatt |
433 |
Q |
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| T |
2146065 |
atagttgtcattgcttagacaaggtatattatt |
2146097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 157 - 431
Target Start/End: Original strand, 2141694 - 2141966
Alignment:
| Q |
157 |
ttatcaaagtaaccgtaacaagtaacatcaagacccctatccgatgcaaagccacaatattgtggtgctttgcaaccacaaagaggtgtattccatcgca |
256 |
Q |
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||||||||||||| |||||||||||||||| ||| || || ||||||||||||| |||| | |||| |||| ||||||||||||||||||||||| |
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| T |
2141694 |
ttatcaaagtaactgtaacaagtaacatcataacctgtaccctttgcaaagccacaaaattgatcttctttacaactacaaagaggtgtattccatcgca |
2141793 |
T |
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| Q |
257 |
acattaaattagagtaaagtccttccatgataaccattggttgaccggatttatctttaactggaaccttagcagatccaatctcattgataaggctaga |
356 |
Q |
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| T |
2141794 |
acaatatatcagagtatagtccatcgtggattaccgttggtagaccggatttatttatgaccggaaccttagctgatcgaatctca-tga-cacgatgga |
2141891 |
T |
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| Q |
357 |
ctccataaattaccaagaagtgattgtaacgcatacatgatcaaatagttgtcattgcttagacaaggtatatta |
431 |
Q |
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| T |
2141892 |
ctccacaaattactaagaggtgattgtaacgtatacatgatcgaatacttgtcattgcttagacaaggtatatta |
2141966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 2141149 - 2141232
Alignment:
| Q |
20 |
agatattttcatgctttggacttggaggatttacgcctatagaattagaact-tagtataagtttttgcaatttatttatacat |
102 |
Q |
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||||| ||| || ||||||| ||| ||||||| | ||| || |||||||||| ||||||||| | ||||||||||||||||||| |
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| T |
2141149 |
agatagttttattctttggagttgtaggatttccacctgtataattagaactgtagtataagctattgcaatttatttatacat |
2141232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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