View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10689_low_1 (Length: 293)

Name: NF10689_low_1
Description: NF10689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10689_low_1
NF10689_low_1
[»] chr1 (1 HSPs)
chr1 (1-293)||(5401919-5402206)


Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 5402206 - 5401919
Alignment:
Q  1 atcacaaatcttaatatatagcattacaccaagc----atagtatatagtgaaaataaaatgaactggtggttggctagagcaactggtgatcatcctgg 96  Q
    |||||||||||||    |||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5402206 atcacaaatctta----atagcattacaccaagcatatatagtatatagtgaaaataaaatgaactggtggttggctagagcaactggtgatcatcctgg 5402111  T
Q  97 caaggcaagttcttacgaacaaaatttgttctatatttttcattttaatgctaattaatttgatatatctattatgaatgacaataagcactgggcaatg 196  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |    
T  5402110 caaggcaagttcttacgaactaaatttgttctatatttttcattttaatgctaattaatttgatatatctattatgaatgacaataaacactgggcaacg 5402011  T
Q  197 aggnnnnnnnnttgatgtatcaactggcaaagaaagttcttatcttagtacacactacgtttaaccgtagctccgtgtttcacaattttccttcatt 293  Q
    |||        ||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5402010 aggaaaaaaaattgatgtatcaactggcaaagaaagt-----tcttagtacacactacgtttaaccgtagctccgtgtttcacaattttccttcatt 5401919  T

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