View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1068_high_13 (Length: 290)
Name: NF1068_high_13
Description: NF1068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1068_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 55 - 281
Target Start/End: Original strand, 43743854 - 43744082
Alignment:
| Q |
55 |
ataattttgtgtttccaannnnnnnnacattcacatttgataaagattcattgcatatct--gagttcattttccttcaaaaacaagttcatttgataat |
152 |
Q |
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| T |
43743854 |
ataattttgtgtttccaattttttttacgttcacatttgataaagattcattacatatatatgagttcattttccttcaaaaacaagttcatttgataat |
43743953 |
T |
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| Q |
153 |
cgtattttaaagaagtacagtagaatatattaatttttattggaggtcaatttaaaattagttcaaggtacgttttctatttannnnnnncttatctaaa |
252 |
Q |
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| T |
43743954 |
cgtattttaaaaaagtacagtagaatatattaatttttattggaggtcaatttaaaattagttcaaggtacgttttctatttatttttttcttatctaaa |
43744053 |
T |
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| Q |
253 |
actatactttgaccgtaccacattcatct |
281 |
Q |
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| T |
43744054 |
actatactttgaccataccacattcatct |
43744082 |
T |
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