View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1068_high_4 (Length: 510)
Name: NF1068_high_4
Description: NF1068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1068_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 11 - 388
Target Start/End: Complemental strand, 29772746 - 29772368
Alignment:
| Q |
11 |
aggaaattgttggcctatagtttctccacaatggattacgattcggaaacacgtgcgaacacccagagactctgcatacatacttcctaatcccatccca |
110 |
Q |
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| T |
29772746 |
aggaaattgttggcctatagtttctccacaatggattacgattcggaaacacgtgcgaacacccagagattctgcatacatacttcctaatcccatccca |
29772647 |
T |
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| Q |
111 |
aaactatcgtacatagctggctgccttgaattacaggagcagattttcacacgcataaaattgggctttgcaccttctcagtcacccaaaaacataacaa |
210 |
Q |
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| T |
29772646 |
aaactatcgtacatagctggctgccttgaattacaggagcagattttcacacgcataaaattgggttttgcaccttctcagtcacccaaaaacataacaa |
29772547 |
T |
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| Q |
211 |
gcagaatgaaccccaattcatccaatctatattttggtgtcattactcaaacctc-nnnnnnnnnnnnnnnngttacatctcttttggtaaagttgcaac |
309 |
Q |
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| T |
29772546 |
gcagaatgaaccccaattcatccaatctatattttggtgtcattactcaaacctcaaaaaaataaaaaaaatgttacatctcttttggtaaagttgcaac |
29772447 |
T |
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| Q |
310 |
gagaaacagtagcactggaagccaacgtaaatgtgaatatgtgat-atttaagaatttcaaatatgtattttccatccct |
388 |
Q |
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| T |
29772446 |
gagaaacagcagcactggaagccaacgtaaatgtgaatatgtgataatttaag-atttcaaatatgtattttccatccct |
29772368 |
T |
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