View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1068_low_10 (Length: 491)
Name: NF1068_low_10
Description: NF1068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1068_low_10 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 6 - 491
Target Start/End: Original strand, 40722762 - 40723257
Alignment:
| Q |
6 |
aataacataacaatgcatgagtttatagtaactagaaa-caaacctgagtggcaatggagtcaagctcatcaaaaaagaggacacatggagctgattgtc |
104 |
Q |
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||||||||| |||| || |||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40722762 |
aataacatagcaatccaggagtttatagtaactagaaaaccaacctgagtggcaatggaatcaagctcatcaaaaaagaggacacatggagctgattgtc |
40722861 |
T |
|
| Q |
105 |
cagccttgtcaaatatttccctaacattggcctcactttcaccaaaccacattgtaagcaattctgggcctttgatactgatgaagttagcttgacattc |
204 |
Q |
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|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||| |
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| T |
40722862 |
tagccttgtcaaaaatttccctaacattggcttcactttcaccaaaccacattgtaagtaattctaggccttttatactgatgaagttagcttgacattc |
40722961 |
T |
|
| Q |
205 |
attagcaattgctttggctaacaaagtttttccacatcccggaggaccatagaagagaactccttttgatggtgacatcc---------caaacttttcc |
295 |
Q |
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| T |
40722962 |
attagcaattgctttggctaacaaagtttttccacatcccggaggaccatagaagagaactccttttgatggtgacatcccaaacttctcaaacttttcc |
40723061 |
T |
|
| Q |
296 |
gggtgctcaactggatattgaacagtctgcgtacacattaaccaaaatcagaaatagataatattggtaaggaaataagttgtaattaagtactaggaaa |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
40723062 |
gggtgctcaactggatattgaacagtctgcgtacacattaaccaaaatcagaaatagataatattggtaaggaaataaggtgtaattaagtactaagaaa |
40723161 |
T |
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| Q |
396 |
gatttctgacctcttgcagttcatgcttgacattctcaaggcctccgatgtcctcccagctgacattaggcacctcaacaacctgttaatacagac |
491 |
Q |
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| T |
40723162 |
gatttctgacctcttgcagttcacgcttgacattctcaaggcctccgatgtcctcccagctgacattaggcacctcaacaacatgttaatacagac |
40723257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 6 - 491
Target Start/End: Complemental strand, 40667242 - 40666748
Alignment:
| Q |
6 |
aataacataacaatgcatgagtttatagtaactagaaacaaacctgagtggcaatggagtcaagctcatcaaaaaagaggacacatggagctgattgtcc |
105 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40667242 |
aataacatagcaatgcatgagtttatagtaactagaaacaaacctgagtggcaatggagtcaagctcatcaaaaaagaggacacatggagctgattgtct |
40667143 |
T |
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| Q |
106 |
agccttgtcaaatatttccctaacattggcctcactttcaccaaaccacattgtaagcaattctgggcctttgatactgatgaagttagcttgacattca |
205 |
Q |
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|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
40667142 |
agccttgtcaaaaatttccctaacattggcatcactttcaccaaaccacattgtaagcaactctgggccttttatactgatgaagttagcttgacattca |
40667043 |
T |
|
| Q |
206 |
ttagcaattgctttggctaacaaagtttttccacatcccggaggaccatagaagagaactccttttgatggtgacatcccaa---------acttttccg |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
40667042 |
ttagcaattgctttggctaacaaagtttttccacatcccggaggaccatagaagagaactcctttggatggtgacatcccaaacttctcaaacttttccg |
40666943 |
T |
|
| Q |
297 |
ggtgctcaactggatattgaacagtctgcgtacacattaaccaaaatcagaaatagataatattggtaaggaaataagttgtaattaagtactaggaaag |
396 |
Q |
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|||||||||| |||||||||||||||| |||||||| ||||||||||||||| || ||| | | |||||||||| || |||||||||||| |||||||| |
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| T |
40666942 |
ggtgctcaaccggatattgaacagtctacgtacacacaaaccaaaatcagaaacaggtaaaactagtaaggaaatcaggtgtaattaagtagtaggaaag |
40666843 |
T |
|
| Q |
397 |
atttctgacctcttgcagttcatgcttgacattctcaaggcctccgatgtcctcccagctgacattaggcacctcaacaacctgttaatacagac |
491 |
Q |
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|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40666842 |
atttatgacctcttgcagttcacgcttgacattctcaaggcctccgatgtcctcccagctgacattaggcacctcaacaacctgttaatacagac |
40666748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 43 - 291
Target Start/End: Complemental strand, 27978528 - 27978280
Alignment:
| Q |
43 |
acaaacctgagtggcaatggagtcaagctcatcaaaaaagaggacacatggagctgattgtccagccttgtcaaatatttccctaacattggcctcactt |
142 |
Q |
| |
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|||||||||||| ||||| || ||||| |||||||| || |||||||||||||| || | ||| |||||||| |||||||| ||||| ||||||||| |
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| T |
27978528 |
acaaacctgagttgcaatagaatcaagttcatcaaagaaaaggacacatggagcagaaccacgagctttgtcaaaaatttccctcacattagcctcactt |
27978429 |
T |
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| Q |
143 |
tcaccaaaccacattgtaagcaattctgggcctttgatactgatgaagttagcttgacattcattagcaattgctttggctaacaaagtttttccacatc |
242 |
Q |
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|| |||||||||||||| |||| || || ||||||||||| |||||||| |||||||||||||| ||||| |||||||| || | ||||| ||||| | |
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| T |
27978428 |
tctccaaaccacattgtgagcagctcgggacctttgatactaatgaagtttgcttgacattcattggcaatagctttggccaaaagggttttaccacaac |
27978329 |
T |
|
| Q |
243 |
ccggaggaccatagaagagaactccttttgatggtgacatcccaaactt |
291 |
Q |
| |
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| T |
27978328 |
caggaggaccatagaacagaactccctttgaaggtgacatcccaaactt |
27978280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 46 - 291
Target Start/End: Original strand, 41091809 - 41092054
Alignment:
| Q |
46 |
aacctgagtggcaatggagtcaagctcatcaaaaaagaggacacatggagctgattgtccagccttgtcaaatatttccctaacattggcctcactttca |
145 |
Q |
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||||||||| |||||||||||||| |||||||| || |||||||||||||| || | ||||||||||| |||||||| || || ||||||||||| |
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| T |
41091809 |
aacctgagttgcaatggagtcaagttcatcaaagaataggacacatggagcagaaccacgggccttgtcaaaaatttccctcacgtttgcctcactttct |
41091908 |
T |
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| Q |
146 |
ccaaaccacattgtaagcaattctgggcctttgatactgatgaagttagcttgacattcattagcaattgctttggctaacaaagtttttccacatcccg |
245 |
Q |
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|||||||||||||| || | || || |||||||||||||| ||||| || || |||||||| ||||| ||||| || || | ||||| |||||||| | |
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| T |
41091909 |
ccaaaccacattgtgagtagctcgggacctttgatactgataaagtttgcctggcattcattggcaatagcttttgccaatagtgttttaccacatccag |
41092008 |
T |
|
| Q |
246 |
gaggaccatagaagagaactccttttgatggtgacatcccaaactt |
291 |
Q |
| |
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||||||||||||| |||||||| || || || ||||| |||||||| |
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| T |
41092009 |
gaggaccatagaaaagaactcccttcgaaggcgacattccaaactt |
41092054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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