View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1068_low_11 (Length: 414)
Name: NF1068_low_11
Description: NF1068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1068_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 14 - 279
Target Start/End: Original strand, 6232751 - 6233012
Alignment:
| Q |
14 |
agagcccatatatcggctggcgattcataaacactatcattcactgcttctggtgacataatcatcggagttcctctcggttgccacttttcaccttgtt |
113 |
Q |
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| T |
6232751 |
agagcccatatatcggctgacgattcatacacactatcattcactgcttctggtgacataatcatcggagttcctctcggttgccacttttcaccttgtt |
6232850 |
T |
|
| Q |
114 |
ctacacctatctctttcgcaaggccgaaatctgaaatcttaatgtttccgttctcgaatacgagaatgttgggcaacttcaaatcacaatgaacaaaccc |
213 |
Q |
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|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6232851 |
ctacacctgtctctttcgcaagcccgaaatctgaaatcttaatgtttccgttctcgaatacgagaatgttgggcaacttcaaatcacaatgaacaaaccc |
6232950 |
T |
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| Q |
214 |
ttttttgtgaatatacttgagtccttcaactaccgacctcgtataattaacggcggacgaggttat |
279 |
Q |
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| T |
6232951 |
ttttttgtgaatatacttgagtccttcaactaccgacctcgta----taacggcggacgaggttat |
6233012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 155
Target Start/End: Original strand, 6221975 - 6222116
Alignment:
| Q |
14 |
agagcccatatatcggctggcgattcataaacactatcattcactgcttctggtgacataatcatcggagttcctctcggttgccacttttcaccttgtt |
113 |
Q |
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|||||||||||||| || || |||||||||||||| || ||||| ||||||||||||||| || |||||||| || || | | ||| |||| |||| |
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| T |
6221975 |
agagcccatatatctgccggtgattcataaacactctcgttcaccgcttctggtgacatatacaatggagttcccctacattccaattttccaccatgtt |
6222074 |
T |
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| Q |
114 |
ctacacctatctctttcgcaaggccgaaatctgaaatcttaa |
155 |
Q |
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| T |
6222075 |
ttagacctttctccttagcaaggccaaaatccgaaatcttaa |
6222116 |
T |
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