View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1068_low_12 (Length: 408)
Name: NF1068_low_12
Description: NF1068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1068_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 34899834 - 34899455
Alignment:
| Q |
1 |
aattttccttccattctcaccaaacatgaaaggtatgtatcttccaactacaaaattttatgtgaatttgtgcagatgatatcactgacaatatgataat |
100 |
Q |
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| T |
34899834 |
aattttccttccattctcaccaaacatgaaaggtatgtatcttccaactacaaaattttatgtgaatttgtgcagatgatatcactgacaatatgataat |
34899735 |
T |
|
| Q |
101 |
ttggtatctcttgcctatcttattataacatttgcatatgcttgtgtggtacgttacgcataaaaaccaagtggaacatgtcaactgacccactaattga |
200 |
Q |
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| T |
34899734 |
ttggtatctcttgcctatcttattataacatttgcatatgcttgtgtggtac-ttacgcataaaaaccaagtggaacatgtcaactgacccactagttga |
34899636 |
T |
|
| Q |
201 |
ggttctcctaataactaagaacatttttagagacacattttcgatattcaattttctgcattcagctaccaactaattatttgtaagtcttagcagacac |
300 |
Q |
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| T |
34899635 |
ggttctcctaataactaagaacatttttagagacacattttcgatattcaattttctgcattcagctaccaactaattatttgtaagtcttagcagacac |
34899536 |
T |
|
| Q |
301 |
ttcttcatagannnnnnnngttgaagaagtcaaaaattatattaaacgaaaaagagatcccaataaatacaagttgagttt |
381 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34899535 |
ttcttcatagattttttttgttgaagaagtcaaaaattatattaaacgaaaaagagatcccaataaatacaagttgagttt |
34899455 |
T |
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