View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1068_low_14 (Length: 385)
Name: NF1068_low_14
Description: NF1068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1068_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 58 - 339
Target Start/End: Original strand, 39519604 - 39519885
Alignment:
| Q |
58 |
aaaagtaagtaattaaaccatttaaaacatgttgcaatgattcaggatgagtaggagcagaatctggaagaagctttccaagataacctggctgcaatgg |
157 |
Q |
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| T |
39519604 |
aaaagtaagtaattaaaccatttaaaacatgttgcaatgattcaggatgagtaggagcagaatctggaagaagctttccaagataacctggctgcaatgg |
39519703 |
T |
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| Q |
158 |
ggtaaaaatgttgaaagaaattgaaacagtaacaaatattagatgaaaatggatagaaagagaacctgaacttggctaagaactggaaaattttcaatgg |
257 |
Q |
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| T |
39519704 |
ggtaaaaatgttgaaagaaattgaaacaataacaaatattagatgaaaatggatagaaagagaacctgaacttggctaagaactggaaaattttcaatgg |
39519803 |
T |
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| Q |
258 |
ttttgtagtaatcagcaatgaaatcaaccatcttatgaccttgctctctcagttgctcagcatccattggcttcatctcact |
339 |
Q |
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| T |
39519804 |
ttttgtagtaatcagcaatgaaatcaaccatcatatgaccttgttctctcagttgctcagcatccattgccttcaactcact |
39519885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 58 - 339
Target Start/End: Original strand, 39532062 - 39532343
Alignment:
| Q |
58 |
aaaagtaagtaattaaaccatttaaaacatgttgcaatgattcaggatgagtaggagcagaatctggaagaagctttccaagataacctggctgcaatgg |
157 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
39532062 |
aaaagtaagtaattaaaccatttaaaacatgttgcaatgattcaggatgagtaggagcagaatctggtagaagctttccaagataacctggctgcaatgg |
39532161 |
T |
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| Q |
158 |
ggtaaaaatgttgaaagaaattgaaacagtaacaaatattagatgaaaatggatagaaagagaacctgaacttggctaagaactggaaaattttcaatgg |
257 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| | |
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| T |
39532162 |
ggtaaaaatattgaaagaaattgaaacagtaacaaatattagatgaaaatggatagaaagagaacctgaacttggctaagaacagggaaattttcaattg |
39532261 |
T |
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| Q |
258 |
ttttgtagtaatcagcaatgaaatcaaccatcttatgaccttgctctctcagttgctcagcatccattggcttcatctcact |
339 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||| |||||| |
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| T |
39532262 |
ttttgtagtaatcagcaatgaaatcaaccatcatatgaccttgttctctcagttgctcagcatccattgccttcaactcact |
39532343 |
T |
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