View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1068_low_15 (Length: 345)
Name: NF1068_low_15
Description: NF1068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1068_low_15 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 74 - 345
Target Start/End: Original strand, 27296053 - 27296309
Alignment:
| Q |
74 |
agacctccgatgctgattccatgccctggtccacagtcgacattgtgtacgtatatgtttgagcatccagtttgtatggaaatacaatcatctcctgcat |
173 |
Q |
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| T |
27296053 |
agacctccgatgctgattccatgccctggtccacagtcgacattgtgtacgtatacatttgagcatccagtttgtatagaaatacaatcatctcctgcat |
27296152 |
T |
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| Q |
174 |
aacagttaagaaaagttcaaaacatggagttctgcatggactagttaccaactgttgtttcgataaatcgaaatgtccaataatttatccgtaattgaaa |
273 |
Q |
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| T |
27296153 |
aatagtaaa-aaaagttcaaacc-------------tggcctaat-accaactgttgtttggataaatagaaatgtgcaataatttatccgtaattgaaa |
27296237 |
T |
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| Q |
274 |
tattaccgcaagccatagtacttttgtatatcaatacatctcttgagttctgtaagtgaattccatcagtgt |
345 |
Q |
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| T |
27296238 |
tattaccgcaagccatagtacttttgtatatcaatacatctcttgagttctgtaagtgaattccatcagtgt |
27296309 |
T |
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Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 38877490 - 38877410
Alignment:
| Q |
6 |
atattgaacatcatttaaggaccaaaacataatcaatttgtttaggcgctgtgaaggttaatcagagcagacctccgatgc |
86 |
Q |
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| T |
38877490 |
atattgaacatcatttaaggaccaaaacataatcaatttgtttaggcgctgtgaaggttaatcagagcagacctctgatgc |
38877410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 83 - 174
Target Start/End: Complemental strand, 14738611 - 14738520
Alignment:
| Q |
83 |
atgctgattccatgccctggtccacagtcgacattgtgtacgtatatgtttgagcatccagtttgtatggaaatacaatcatctcctgcata |
174 |
Q |
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| T |
14738611 |
atgctgattccatgtcccggaccacagttgacattgtgtacatatacatttgagcatccagtttgtatagaaatgcaatcatctcctgcata |
14738520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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