View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1068_low_18 (Length: 319)
Name: NF1068_low_18
Description: NF1068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1068_low_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 58 - 307
Target Start/End: Original strand, 39519604 - 39519853
Alignment:
| Q |
58 |
aaaagtaagtaattaaaccatttaaaacatgttgcaatgattcaggatgagtaggagcagaatctggaagaagctttccaagataacctggctgcaatgg |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39519604 |
aaaagtaagtaattaaaccatttaaaacatgttgcaatgattcaggatgagtaggagcagaatctggaagaagctttccaagataacctggctgcaatgg |
39519703 |
T |
|
| Q |
158 |
ggtaaaaatgttgaaagaaattgaaacagtaacaaatattagatgaaaatggatagaaagagaacctgaacttggctaagaactggaaaattttcaatgg |
257 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39519704 |
ggtaaaaatgttgaaagaaattgaaacaataacaaatattagatgaaaatggatagaaagagaacctgaacttggctaagaactggaaaattttcaatgg |
39519803 |
T |
|
| Q |
258 |
ttttgtagtaatcagcaatgaaatcaaccatcttatgaccttgctctctc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
39519804 |
ttttgtagtaatcagcaatgaaatcaaccatcatatgaccttgttctctc |
39519853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 58 - 307
Target Start/End: Original strand, 39532062 - 39532311
Alignment:
| Q |
58 |
aaaagtaagtaattaaaccatttaaaacatgttgcaatgattcaggatgagtaggagcagaatctggaagaagctttccaagataacctggctgcaatgg |
157 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39532062 |
aaaagtaagtaattaaaccatttaaaacatgttgcaatgattcaggatgagtaggagcagaatctggtagaagctttccaagataacctggctgcaatgg |
39532161 |
T |
|
| Q |
158 |
ggtaaaaatgttgaaagaaattgaaacagtaacaaatattagatgaaaatggatagaaagagaacctgaacttggctaagaactggaaaattttcaatgg |
257 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| | |
|
|
| T |
39532162 |
ggtaaaaatattgaaagaaattgaaacagtaacaaatattagatgaaaatggatagaaagagaacctgaacttggctaagaacagggaaattttcaattg |
39532261 |
T |
|
| Q |
258 |
ttttgtagtaatcagcaatgaaatcaaccatcttatgaccttgctctctc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
39532262 |
ttttgtagtaatcagcaatgaaatcaaccatcatatgaccttgttctctc |
39532311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University