View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1068_low_19 (Length: 314)
Name: NF1068_low_19
Description: NF1068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1068_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 29 - 285
Target Start/End: Original strand, 29772758 - 29773006
Alignment:
| Q |
29 |
tcatctgatagaatgttactctctatcaagcatgcacattgggacacgacactgacatgtgacattgtaataatttgagatttgagatagtggaagtgat |
128 |
Q |
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| T |
29772758 |
tcatctgatagaatgttactctctatcaagcatgcacattgggacacgacactgacatgtgacattgtaataatttgagat-------agtggaagtgat |
29772850 |
T |
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| Q |
129 |
catacacgggacacccttgaatctgaaagtttccgtactaaacaggttagtctcacccatcatcttcttactgnnnnnnngtttgtttgttattcttaca |
228 |
Q |
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||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
29772851 |
catacacgggacacccttgaatctgaa-gtttgcgtactaaacaggtatgtctcacccatcatcttcttactgtttttttgtttgtttgttattcttaca |
29772949 |
T |
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| Q |
229 |
gaaaactggtagcataacatacaatggccatgagatagatgaattttatgttagaag |
285 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29772950 |
gaaaactggtagcataacctacaatggccatgagatagatgaattttatgttagaag |
29773006 |
T |
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