View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1068_low_21 (Length: 305)
Name: NF1068_low_21
Description: NF1068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1068_low_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 14 - 276
Target Start/End: Original strand, 53331404 - 53331666
Alignment:
| Q |
14 |
agggggaagttaacttgttagcatccatatattttgattaagttaacttgggagatcaattattgtttgttatctctacttaaatatatagcctttaaat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53331404 |
agggggaagttaacttgttagcatccatatattttgattaagttaacttgggagatcaattattgtttgttatctctacttaaatatatagcctttaaat |
53331503 |
T |
|
| Q |
114 |
gtcgccttgttgcactgctctattaccagtttatcataatgttattctaaaatattgggaggcaaattgatccattttataaagccattcttgcactcaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53331504 |
gtcgccttgttgcactgctctattaccagtttatcataatgttattctaaaatattgggaggcaaattgatccattttataaagccattcttgcactcaa |
53331603 |
T |
|
| Q |
214 |
gtcttcaaactcagatgttgaggcacgtggagggccaagggggaagtgaaccatgcttggttg |
276 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
53331604 |
gtcttcaaactcagatgttgaggcacatggagggccaagggggaagtgaaccatgcttggttg |
53331666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University