View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1068_low_22 (Length: 295)
Name: NF1068_low_22
Description: NF1068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1068_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 30 - 285
Target Start/End: Complemental strand, 9502811 - 9502556
Alignment:
| Q |
30 |
ggcatcacccgccacctccctatccattttaccaaaacacccttccatcaccctctcccaatcccattccctatcctcccaacacatctcgacctcctcc |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
9502811 |
ggcatcacccgccacctccctatccattttaccaaaacacccttccatcaccctctcccaatcccattccctatcctcccaaaacatctcaacctcctcc |
9502712 |
T |
|
| Q |
130 |
gccacaatcctatacaacctctctctacacgacaccgccacctgagcaccaccgtgaccatcataaacaccgaagaaatcacacttctctccatccttca |
229 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9502711 |
gccacaatcctatacaacctctctctacacgacaccgccacctgagcaccaccgtgaccatcataaacaccgaagaaatcacacttctctccatccttca |
9502612 |
T |
|
| Q |
230 |
tcgtaaaacctatccccacactcaccgcatcctccatttccttcctacagcctatg |
285 |
Q |
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|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
9502611 |
tcgtaaaacctatctccatactcaccgcatcctccatttccttcctacagcctatg |
9502556 |
T |
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