View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1068_low_27 (Length: 231)
Name: NF1068_low_27
Description: NF1068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1068_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 8 - 226
Target Start/End: Complemental strand, 36890374 - 36890157
Alignment:
| Q |
8 |
aaatataaacggaatagctatgtccaagaggtgtccgttcggtggttcaaatttcatctgagttgtaatttgatcattagtgtcactcttattaatcaaa |
107 |
Q |
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|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
36890374 |
aaatataaacggaatagccatatccaagaggtgtccgttcggtggttcaaatttcatctgagttgtaatttgattatttgtgtcactcttattaatcaaa |
36890275 |
T |
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| Q |
108 |
tttcccctctccannnnnnnataaaataattattaattactttcacagttatgtatgttcttatttcannnnnnnnnnaatatcactatatatttttgtt |
207 |
Q |
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||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
36890274 |
tttcccctctccatttttttataaaataattataaattactttcacagttatgtatgttcttatttca-tttttttttaatatcactatatatttttgtt |
36890176 |
T |
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| Q |
208 |
ttggtacattcatctcact |
226 |
Q |
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||||||||||||| ||||| |
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| T |
36890175 |
ttggtacattcatatcact |
36890157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 29824582 - 29824627
Alignment:
| Q |
68 |
agttgtaatttgatcattagtgtcactcttattaatcaaatttccc |
113 |
Q |
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|||||||||||| ||||||||| |||| |||||||| ||||||||| |
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| T |
29824582 |
agttgtaatttggtcattagtgccactgttattaataaaatttccc |
29824627 |
T |
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