View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1068_low_3 (Length: 706)
Name: NF1068_low_3
Description: NF1068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1068_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 582; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 101 - 698
Target Start/End: Complemental strand, 54396698 - 54396101
Alignment:
| Q |
101 |
tcacaactaccaagccttcttcaaatattctctctcacaaaagattccccccaaggtgaagacatgaaagacataattgatcaatgtgaatttgaaccca |
200 |
Q |
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| T |
54396698 |
tcacaactaccaagccttcttcaactcttctctctcacaaaagattccccccaaggtgaagacatgaaagacataattgatcaatgtgaatttgaaccca |
54396599 |
T |
|
| Q |
201 |
caaaaggggagaccaaagcttgtcctacttcattagagtccatgcttgaatttgttcatagtgttcttggtactgaggccagatataacatccacacaac |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
54396598 |
caaaaggggagaccaaagcttgtcctacttcattagagtccatgcttgaatttgttcatagtgttcttggtactgaggccagatataacattcacacaac |
54396499 |
T |
|
| Q |
301 |
tagctatcccacaacatcaggtgcacgtttgcagaactacaccattttgaaaatctcaaaggatatctatgctcctaaatgggtagcttgtcaccctagg |
400 |
Q |
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| T |
54396498 |
tagctatcccacaacatcaggtgcacgtttgcagaactacaccattttgaaaatctcaaaggatatctatgctcctaaatgggtagcttgtcaccctagg |
54396399 |
T |
|
| Q |
401 |
ccttacccttatgctctttactattgccactacctagacatagggagtaaggtcttcaaagttcttctaaagggtcaatatggagacataatggatgctt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54396398 |
ccttacccttatgctctttactattgccactacctagacatagggagtaaggtcttcaaagttcttctaaagggtcaatatggagacataatggatgctt |
54396299 |
T |
|
| Q |
501 |
tgggcatttgccacctagacacgtctgacatgaatcctaatcattttatatttcaactacttggaataaagcctggggaagctcctatgtgccatttctt |
600 |
Q |
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| T |
54396298 |
tgggcatttgccacctagacacgtctgacatgaatcctaatcattttatatttcaactacttggaataaagcctggggaagctcctatgtgccatttctt |
54396199 |
T |
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| Q |
601 |
ccctgtaaagcacgttctatgggcaccactcccaccagaggccacccactgaaccaaagggaactagttgatcatatttctatgtcattccctatgct |
698 |
Q |
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| T |
54396198 |
ccctgtaaagcatgttctatgggcaccactcccaccagaggccacccactgaaccaaagggaactagttgatcatatttctatgtcattccctatgct |
54396101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 104 - 669
Target Start/End: Complemental strand, 54381811 - 54381246
Alignment:
| Q |
104 |
caactaccaagccttcttcaaatattctctctcacaaaagattccccccaaggtgaagacatgaaagacataattgatcaatgtgaatttgaacccacaa |
203 |
Q |
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|||||||| |||||||||||| ||||||| ||||||||||| || |||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
54381811 |
caactacctagccttcttcaactattctcactcacaaaagactctccccaaggtgaagatatgaaagacataattgatcaatgtgagtttgaacccacaa |
54381712 |
T |
|
| Q |
204 |
aaggggagaccaaagcttgtcctacttcattagagtccatgcttgaatttgttcatagtgttcttggtactgaggccagatataacatccacacaactag |
303 |
Q |
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| T |
54381711 |
aaggggagaccaaggcctgtcccacttctttagagtccatgcttgaatttgttcacagcgttctcggtgccgaggccagatataacattcacacaactag |
54381612 |
T |
|
| Q |
304 |
ctatcccacaacatcaggtgcacgtttgcagaactacaccattttgaaaatctcaaaggatatctatgctcctaaatgggtagcttgtcaccctaggcct |
403 |
Q |
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|||||| ||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
54381611 |
ctatccgacaacatcaggtgtgcgtttgcaaaactacaccattttggaaatctcaaaggatatctatgctcctaaatgggtagcttgtcaccctagacct |
54381512 |
T |
|
| Q |
404 |
tacccttatgctctttactattgccactacctagacatagggagtaaggtcttcaaagttcttctaaagggtcaatatggagacataatggatgctttgg |
503 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
54381511 |
tacccttatgctctttactattgccactacctagacataggcagtaggatcttcaaagttcttctaaggggtcaatatggagacatgatggatgctttgg |
54381412 |
T |
|
| Q |
504 |
gcatttgccacctagacacgtctgacatgaatcctaatcattttatatttcaactacttggaataaagcctggggaagctcctatgtgccatttcttccc |
603 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||| |
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| T |
54381411 |
gcatttgccacctagacacgtctgacatgaatcctaatcattttatatttcaactacttggaatgaagcctggggaagctccactgtgtcatttcttccc |
54381312 |
T |
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| Q |
604 |
tgtaaagcacgttctatgggcaccactcccaccagaggccacccactgaaccaaagggaactagtt |
669 |
Q |
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| T |
54381311 |
tgtaaagcacattgtatgggcgccactcccaccagaggccaccaactgaacaagagggaactagtt |
54381246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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