View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1068_low_4 (Length: 585)
Name: NF1068_low_4
Description: NF1068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1068_low_4 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 136; Significance: 1e-70; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 166 - 309
Target Start/End: Original strand, 3900692 - 3900835
Alignment:
| Q |
166 |
atcttcgacaatagatatcacttgaaaaacgtaatcccattatcgactatgctctctgcaaccaacatttttagctttggtttatttcaatgctagcttg |
265 |
Q |
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| T |
3900692 |
atcttcgacaatagatatctcttgaaaaacgtaatcccattatcgaccatgctctctgcaaccaacatttttagctttggtttatttcaatgctagcttg |
3900791 |
T |
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| Q |
266 |
gaatggaacatgatggccagggagttagggtaagaataaggtga |
309 |
Q |
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| T |
3900792 |
gaatggaacatgatggccagggagttagggtaagaataaggtga |
3900835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 307 - 376
Target Start/End: Original strand, 3900864 - 3900933
Alignment:
| Q |
307 |
tgactctgaaagttccattgaagtgatgtaaatgaaaacaactttgtaagggctctttaaaacaaaagtc |
376 |
Q |
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| T |
3900864 |
tgactctgaaagttctatcgaagtgatgtaaatgaaaacaactttgtaagggctctttaaaacgaaagtc |
3900933 |
T |
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Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 534 - 585
Target Start/End: Original strand, 34819847 - 34819898
Alignment:
| Q |
534 |
tcttgttggcctcgccttcataactcttccctttcttctttaaaggacatgc |
585 |
Q |
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| T |
34819847 |
tcttgttggcctcgcctttatcactcttccctttcttctttaaaggacatgc |
34819898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 544 - 580
Target Start/End: Original strand, 34820133 - 34820169
Alignment:
| Q |
544 |
ctcgccttcataactcttccctttcttctttaaagga |
580 |
Q |
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| T |
34820133 |
ctcgcctttatcactcttccctttcttctttaaagga |
34820169 |
T |
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