View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1068_low_9 (Length: 495)
Name: NF1068_low_9
Description: NF1068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1068_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 79 - 467
Target Start/End: Original strand, 38877102 - 38877490
Alignment:
| Q |
79 |
cctgtgctatctttctttctagatgaaacctgtatctgatttttaattttgattttaagttggcagcgaaattccgtttctggtagaaaaactgtggttg |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38877102 |
cctgtgctatctttctttctagatgaaacctgtatctgatttttaattttgattttaagttggcagcaaaattccgtttctggtagaaaaactgtggttg |
38877201 |
T |
|
| Q |
179 |
atgttggcaaaaactagtcccttaggagtttctttcagtatgtatatagatgataattattcagatcataagtgaaattgatcttcaatgcctgtaggcc |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38877202 |
atgttggcaaaaactagtcccttaggagtttctttcagtatgtatatagatgataattattcagatcataagtgaaattgatcttcaatgcctgtaggcc |
38877301 |
T |
|
| Q |
279 |
gtacaacttggaagccgtgagcgtctccttgctttttgtgaggctgttcagagaagctctcccgtggggtcatacaccaaaccaattgcgggtaccactc |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38877302 |
gtacaacttggaagccgtgagcgtctccttgctttttgtgaggctgttcagagaagctctcctgtggggtcatacaccaaaccaattgcgggtaccactc |
38877401 |
T |
|
| Q |
379 |
ctggatatgcatcagaggtctgctctgattaaccttcacagcgcctaaacaaattgattatgttttggtccttaaatgatgttcaatat |
467 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38877402 |
ctggatatgcatcagaggtctgctctgattaaccttcacagcgcctaaacaaattgattatgttttggtccttaaatgatgttcaatat |
38877490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University