View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10690_high_2 (Length: 246)

Name: NF10690_high_2
Description: NF10690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10690_high_2
NF10690_high_2
[»] chr3 (6 HSPs)
chr3 (1-239)||(51120811-51121049)
chr3 (50-158)||(51113780-51113888)
chr3 (50-223)||(13470666-13470839)
chr3 (50-223)||(51764374-51764547)
chr3 (70-137)||(27005792-27005859)
chr3 (99-153)||(1657292-1657346)
[»] chr8 (9 HSPs)
chr8 (50-158)||(18315272-18315380)
chr8 (50-224)||(34936096-34936270)
chr8 (45-155)||(27922495-27922605)
chr8 (45-156)||(17636402-17636513)
chr8 (50-158)||(32151293-32151401)
chr8 (50-175)||(21235550-21235675)
chr8 (45-237)||(28246215-28246405)
chr8 (95-136)||(17628035-17628076)
chr8 (100-155)||(17643598-17643653)
[»] chr5 (7 HSPs)
chr5 (45-222)||(32267462-32267636)
chr5 (46-223)||(41889488-41889665)
chr5 (45-150)||(41901542-41901647)
chr5 (50-150)||(37937879-37937979)
chr5 (53-151)||(38267562-38267660)
chr5 (50-132)||(20478107-20478189)
chr5 (47-100)||(12845582-12845635)
[»] chr4 (29 HSPs)
chr4 (50-224)||(553471-553645)
chr4 (50-160)||(1524483-1524593)
chr4 (50-223)||(3438500-3438672)
chr4 (46-157)||(8187091-8187202)
chr4 (46-158)||(1548423-1548535)
chr4 (1-158)||(546856-547013)
chr4 (50-175)||(570343-570468)
chr4 (50-157)||(1513407-1513514)
chr4 (53-156)||(8184031-8184134)
chr4 (50-161)||(1537763-1537874)
chr4 (50-156)||(12121458-12121564)
chr4 (50-223)||(7225817-7225990)
chr4 (37-216)||(55908669-55908848)
chr4 (50-127)||(1508033-1508110)
chr4 (51-155)||(7307853-7307957)
chr4 (92-223)||(1600453-1600584)
chr4 (55-176)||(532186-532307)
chr4 (96-156)||(1519143-1519203)
chr4 (64-155)||(1545779-1545870)
chr4 (51-158)||(1552766-1552873)
chr4 (49-223)||(53761706-53761878)
chr4 (85-222)||(659736-659873)
chr4 (51-223)||(640908-641080)
chr4 (92-156)||(12116576-12116640)
chr4 (50-157)||(1489361-1489468)
chr4 (46-130)||(55505135-55505219)
chr4 (46-104)||(12123423-12123481)
chr4 (53-102)||(558493-558542)
chr4 (51-108)||(566182-566239)
[»] chr6 (24 HSPs)
chr6 (53-223)||(6402855-6403025)
chr6 (48-178)||(6394854-6394984)
chr6 (50-223)||(6432153-6432326)
chr6 (65-237)||(6585157-6585329)
chr6 (66-170)||(12102274-12102378)
chr6 (50-160)||(6409998-6410108)
chr6 (54-223)||(6594540-6594709)
chr6 (45-237)||(11936195-11936387)
chr6 (45-237)||(11948175-11948367)
chr6 (52-179)||(14820687-14820814)
chr6 (50-155)||(6423209-6423314)
chr6 (50-237)||(7994102-7994289)
chr6 (50-160)||(6415958-6416068)
chr6 (53-223)||(7119152-7119322)
chr6 (53-223)||(7131630-7131800)
chr6 (50-159)||(9411347-9411456)
chr6 (52-160)||(14818376-14818484)
chr6 (50-130)||(19632431-19632511)
chr6 (53-151)||(14802331-14802429)
chr6 (53-132)||(10579761-10579840)
chr6 (92-155)||(28935083-28935146)
chr6 (48-178)||(6426501-6426631)
chr6 (72-158)||(6589322-6589408)
chr6 (53-129)||(6603230-6603306)
[»] chr2 (3 HSPs)
chr2 (50-224)||(45245018-45245192)
chr2 (37-223)||(1037598-1037784)
chr2 (53-156)||(32785773-32785876)
[»] chr1 (3 HSPs)
chr1 (59-155)||(52082582-52082678)
chr1 (48-178)||(19468478-19468608)
chr1 (57-155)||(52092776-52092874)
[»] chr7 (3 HSPs)
chr7 (50-223)||(15092085-15092258)
chr7 (95-237)||(7977615-7977757)
chr7 (50-223)||(10614585-10614758)
[»] scaffold0295 (1 HSPs)
scaffold0295 (57-178)||(603-724)
[»] scaffold0041 (1 HSPs)
scaffold0041 (51-130)||(39177-39256)


Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-128; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 51121049 - 51120811
Alignment:
Q  1 catgtttcactcctttttgtgtgacatacaaacagctttctagagacaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51121049 catgtttcactcctttttgtgtgacatacaaacagctttctagagacaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatc 51120950  T
Q  101 aactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtcta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  51120949 aactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcagtttcactcttgaacaaccggtgaagttcaagtgtcta 51120850  T
Q  201 atgttacaacatctccataaaacacaaccaatacctttg 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  51120849 atgttacaacatctccataaaacacaaccaatacctttg 51120811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 50 - 158
Target Start/End: Complemental strand, 51113888 - 51113780
Alignment:
Q  50 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 149  Q
    |||||||||||||| ||||||||| ||||| ||||| ||| |||||||||||||  ||||||  |||||||  |||||||||| |||| || ||||||||    
T  51113888 ttgcaaaagcccacaacaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagtttgggagcttcaaag 51113789  T
Q  150 ttcattcca 158  Q
    |||||||||    
T  51113788 ttcattcca 51113780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 50 - 223
Target Start/End: Complemental strand, 13470839 - 13470666
Alignment:
Q  50 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 149  Q
    |||||||||||||| |||| |||||||||| | ||| ||| ||| ||||| |||  ||||||  |||||||||||||||||||  ||| ||||  |||||    
T  13470839 ttgcaaaagcccacaacaattctttgagatcatatagagtgttttatcattaacctttgtatttgacaagttcaacacctccagattgggaacaacaaag 13470740  T
Q  150 ttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 223  Q
    ||||||||| |  | |||||| ||  ||||  ||  |||||||| || ||||| ||||||||| ||| ||||||    
T  13470739 ttcattccaagtagcttcacttttttacaataggctaagttcaaatgcctaatcttacaacatatccttaaaac 13470666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 50 - 223
Target Start/End: Complemental strand, 51764547 - 51764374
Alignment:
Q  50 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 149  Q
    |||||||||||| | |||| ||||||||||  |||| ||| ||| |||||||||| |||||   |||||||  ||||||||||  ||  ||||| |||||    
T  51764547 ttgcaaaagcccgcaacaattctttgagatcgcatagagtgttttatcatcaacttttgtaaatgacaagtctaacacctccagcttcggaactgcaaag 51764448  T
Q  150 ttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 223  Q
    ||||||||| |  | ||||||||||||||  |||  | |||||| || ||||| ||| ||||||||| ||||||    
T  51764447 ttcattccaagtagcttcactcttgaacattcggataggttcaaatgcctaatcttagaacatctccttaaaac 51764374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 137
Target Start/End: Complemental strand, 27005859 - 27005792
Alignment:
Q  70 tctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttg 137  Q
    |||||||||||||||| ||| ||  || ||||| ||||||||| ||||||||||| ||||||| ||||    
T  27005859 tctttgagattacataaagtgttgtattatcaattcttgtatgtgacaagttcaagacctccagtttg 27005792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 153
Target Start/End: Original strand, 1657292 - 1657346
Alignment:
Q  99 tcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttca 153  Q
    ||||||||||||   ||||||| ||||||||||| |||| |||||||||||||||    
T  1657292 tcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttca 1657346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 50 - 158
Target Start/End: Complemental strand, 18315380 - 18315272
Alignment:
Q  50 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 149  Q
    ||||||||||| |||||||||||||||||| ||||| |||  ||||||||||||| ||||||| ||||||||||||||||||| |||| |||||| ||||    
T  18315380 ttgcaaaagcctacgacaactctttgagatcacatagagtgcttcatcatcaacttttgtatgtgacaagttcaacacctccagtttgggaactttaaag 18315281  T
Q  150 ttcattcca 158  Q
    |||||||||    
T  18315280 ttcattcca 18315272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 50 - 224
Target Start/End: Complemental strand, 34936270 - 34936096
Alignment:
Q  50 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 149  Q
    |||||||||||||||||||||||||| |||  |||| ||| ||| |||||||||||||||||  ||||||| ||||||||| | |||  |||| ||||||    
T  34936270 ttgcaaaagcccacgacaactctttgcgatggcatagagtgttttatcatcaactcttgtatatgacaagtccaacacctctagttttggaacatcaaag 34936171  T
Q  150 ttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaaca 224  Q
     ||||||  ||  | |||||| |||||||| ||| ||||| ||| |||||||||| ||||||||||| |||||||    
T  34936170 atcattctgtgaaggttcacttttgaacaatcggccaagtacaaatgtctaatgtcacaacatctccttaaaaca 34936096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 45 - 155
Target Start/End: Original strand, 27922495 - 27922605
Alignment:
Q  45 gacaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaactt 144  Q
    ||||||| ||||||||||| ||||||||||||||| | ||| |||  ||||||||||||  ||||||  |||||||||||||||||||||||| ||||||    
T  27922495 gacaatttcaaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaacatttgtatatgacaagttcaacacctccaatttgggaactt 27922594  T
Q  145 caaagttcatt 155  Q
    |||||||||||    
T  27922595 caaagttcatt 27922605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 45 - 156
Target Start/End: Complemental strand, 17636513 - 17636402
Alignment:
Q  45 gacaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaactt 144  Q
    |||||||||||||| | | |||||||||||||||| ||||| | |  |||||| ||||||| ||| || |||||||||||||||||||||||| ||||||    
T  17636513 gacaattgcaaaagtctaagacaactctttgagatcacatacaatgcttcatcgtcaactcctgtttgtgacaagttcaacacctccaatttgggaactt 17636414  T
Q  145 caaagttcattc 156  Q
    ||||||||||||    
T  17636413 caaagttcattc 17636402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 50 - 158
Target Start/End: Original strand, 32151293 - 32151401
Alignment:
Q  50 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 149  Q
    |||||||||||||| ||||||||||||||| ||||| ||| ||||||||||||  ||||||   |||||||| ||||||||||  |||  |||||| |||    
T  32151293 ttgcaaaagcccactacaactctttgagatcacatagagtgtttcatcatcaaaccttgtacatgacaagtttaacacctccagattggaaacttcgaag 32151392  T
Q  150 ttcattcca 158  Q
    |||||||||    
T  32151393 ttcattcca 32151401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 175
Target Start/End: Original strand, 21235550 - 21235675
Alignment:
Q  50 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 149  Q
    |||||||||||  ||||| |||||||| || | ||| |||| ||| | |||||||| |||||  ||||||||||||||||||| |||| |||||||||||    
T  21235550 ttgcaaaagcctgcgacagctctttgaaatcaaatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaag 21235649  T
Q  150 ttcattccatgcggtttcactcttga 175  Q
    |||| ||||  | |||||||| ||||    
T  21235650 ttcactccacacagtttcacttttga 21235675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 45 - 237
Target Start/End: Complemental strand, 28246405 - 28246215
Alignment:
Q  45 gacaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaactt 144  Q
    |||| |||||||||||| | |||||||||||||||   ||| |||  || ||  ||||||||||||   ||||||| ||||||||||| |||| ||||||    
T  28246405 gacagttgcaaaagcccgctacaactctttgagatccaatagagtgatttat--tcaactcttgtaaatgacaagtccaacacctccagtttgggaactt 28246308  T
Q  145 caaagttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaacacaaccaatacctt 237  Q
    ||||||||| |  |||  | |||| |||||||||||  || || ||||| |||||||||||||||||| ||  |||||||  | |||||||||    
T  28246307 caaagttcaatgtatgtagcttcagtcttgaacaacgagttaaattcaaatgtctaatgttacaacatatcattaaaacatgaacaatacctt 28246215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 17628076 - 17628035
Alignment:
Q  95 atcatcaactcttgtatgcgacaagttcaacacctccaattt 136  Q
    |||||||||||| ||||| |||||||||||||||||||||||    
T  17628076 atcatcaactctagtatgtgacaagttcaacacctccaattt 17628035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 155
Target Start/End: Complemental strand, 17643653 - 17643598
Alignment:
Q  100 caactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcatt 155  Q
    |||||||||| || |||||||||||| ||||||||||| ||||| ||| |||||||    
T  17643653 caactcttgtttgtgacaagttcaacgcctccaatttgggaactccaacgttcatt 17643598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 45 - 222
Target Start/End: Original strand, 32267462 - 32267636
Alignment:
Q  45 gacaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaactt 144  Q
    ||||||| ||||||||||| ||||||||||||||| | ||| |||  ||||||||||||| |||| || ||||||||||| |||||||||||| ||||||    
T  32267462 gacaatttcaaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtttgtgacaagttcaatacctccaatttgggaactt 32267561  T
Q  145 caaagttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaa 222  Q
    |||||||||||   |   |||||||| |||||||   ||  |||||||| |||||||||||||||||| ||| |||||    
T  32267562 caaagttcatt---tctagtttcactgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaa 32267636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 46 - 223
Target Start/End: Complemental strand, 41889665 - 41889488
Alignment:
Q  46 acaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttc 145  Q
    |||||| | ||||||| | |||||||||||||||   ||| ||| |||||||||||||| ||||||  || ||||||||||||||||||||| ||||||     
T  41889665 acaatttcgaaagcccgcaacaactctttgagatcttataaagtgtttcatcatcaacttttgtatatgataagttcaacacctccaatttgggaacttt 41889566  T
Q  146 aaagttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 223  Q
    |||||||||| || |  | |||||| ||||||| ||||  |||||||| | |||||||||||||||| ||| ||||||    
T  41889565 aaagttcatttcaagtagcttcactattgaacatccggataagttcaaatatctaatgttacaacatatccttaaaac 41889488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 45 - 150
Target Start/End: Complemental strand, 41901647 - 41901542
Alignment:
Q  45 gacaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaactt 144  Q
    ||||||| |||||| |||| ||||||||||||||| | ||| |||  ||||||||||||| ||||||  ||||||||||||||||||| |||| ||||||    
T  41901647 gacaatttcaaaagtccacaacaactctttgagatcatataaagtgcttcatcatcaacttttgtatatgacaagttcaacacctccagtttgggaactt 41901548  T
Q  145 caaagt 150  Q
    ||||||    
T  41901547 caaagt 41901542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 50 - 150
Target Start/End: Original strand, 37937879 - 37937979
Alignment:
Q  50 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 149  Q
    ||||||||||||||||||  |||||||||||||||| ||| ||| |||||||| ||||||||| | ||||| ||||||||| |  ||| |||||||||||    
T  37937879 ttgcaaaagcccacgacacatctttgagattacatagagtgtttgatcatcaattcttgtatgtgtcaagtccaacacctcaaggttgggaacttcaaag 37937978  T
Q  150 t 150  Q
    |    
T  37937979 t 37937979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 53 - 151
Target Start/End: Complemental strand, 38267660 - 38267562
Alignment:
Q  53 caaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagtt 151  Q
    |||||||||||| ||  |||||||||||||||| ||| | |||||||||||||||||||| | ||||| ||||||||| |  ||| |||||||||||||    
T  38267660 caaaagcccacggcacgtctttgagattacatagagtgtgtcatcatcaactcttgtatgtgtcaagtccaacacctcaaggttgggaacttcaaagtt 38267562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 20478189 - 20478107
Alignment:
Q  50 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctcca 132  Q
    |||||||||||||| |||| || ||||||| ||| ||| | |||| ||||||||  ||||||  |||||||||||||||||||    
T  20478189 ttgcaaaagcccacaacaattccttgagatcacagataatgtttcgtcatcaacatttgtatatgacaagttcaacacctcca 20478107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 12845582 - 12845635
Alignment:
Q  47 caattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatc 100  Q
    ||||||||| || |||| |||||||||||||||| ||||||||  |||||||||    
T  12845582 caattgcaatagaccacaacaactctttgagattgcatatagtgcttcatcatc 12845635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 50 - 224
Target Start/End: Original strand, 553471 - 553645
Alignment:
Q  50 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 149  Q
    |||||||||||||  |||||||||||| || ||||  |||  |||||||||||||||||||   ||||||||||||||||||| ||||||||||| ||||    
T  553471 ttgcaaaagcccagaacaactctttgaaatcacattaagtgcttcatcatcaactcttgtaaatgacaagttcaacacctccagtttgagaactttaaag 553570  T
Q  150 ttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaaca 224  Q
    |||| |  | |    |||||||||||||| | ||| |||||||| |||||||||||||||||| ||| |||||||    
T  553571 ttcaatgtacgtaacttcactcttgaacagcgggttaagttcaaatgtctaatgttacaacatgtccttaaaaca 553645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 50 - 160
Target Start/End: Complemental strand, 1524593 - 1524483
Alignment:
Q  50 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 149  Q
    ||||||||||||||||||||||| |||||| | ||| ||| ||||||||||||| |||||| | ||||| |||||||||||||| ||| |||||||||||    
T  1524593 ttgcaaaagcccacgacaactctgtgagatcatatagagtgtttcatcatcaacacttgtacgtgacaaattcaacacctccaaattgggaacttcaaag 1524494  T
Q  150 ttcattccatg 160  Q
    |||||||||||    
T  1524493 ttcattccatg 1524483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 50 - 223
Target Start/End: Complemental strand, 3438672 - 3438500
Alignment:
Q  50 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 149  Q
    |||||||||||||| ||||||||||||||||||||  ||| ||| |||||||||||||||||| |||||| |||| |||||||||||   ||| ||||||    
T  3438672 ttgcaaaagcccacaacaactctttgagattacatggagtattt-atcatcaactcttgtatgtgacaagctcaatacctccaattttgaaacatcaaag 3438574  T
Q  150 ttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 223  Q
    |||||| ||  |   ||||||| | ||||||| |  |||||||| |||||||| ||||||||||||| ||||||    
T  3438573 ttcattgcacacaaattcactcctaaacaaccagctaagttcaaatgtctaatcttacaacatctccttaaaac 3438500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 46 - 157
Target Start/End: Complemental strand, 8187202 - 8187091
Alignment:
Q  46 acaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttc 145  Q
    |||| ||||||||||||| |||||||||||| ||| |||| ||| ||| |||||||||||||||||| ||||||||||||||||||| ||||  || |||    
T  8187202 acaactgcaaaagcccacaacaactctttgaaattgcataaagtgttttatcatcaactcttgtatgtgacaagttcaacacctccagtttggaaatttc 8187103  T
Q  146 aaagttcattcc 157  Q
    ||||||||||||    
T  8187102 aaagttcattcc 8187091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 46 - 158
Target Start/End: Complemental strand, 1548535 - 1548423
Alignment:
Q  46 acaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttc 145  Q
    |||| ||||||||||||| ||||||||||||||| ||||  ||| ||||||||||||  |||||||| ||||||||||||||||||| |||| ||| |||    
T  1548535 acaagtgcaaaagcccacaacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttc 1548436  T
Q  146 aaagttcattcca 158  Q
    |||||||| ||||    
T  1548435 aaagttcagtcca 1548423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 546856 - 547013
Alignment:
Q  1 catgtttcactcctttttgtgtgacatacaaacagctttctagagacaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatc 100  Q
    ||||||||||||| || | ||||||||  |||||   ||| ||  |||||| ||||||||||| ||||||||||||||| ||||| ||| |||||||||     
T  546856 catgtttcactcccttctctgtgacatgaaaacattcttccagtaacaattccaaaagcccacaacaactctttgagatcacatagagtgtttcatcatt 546955  T
Q  101 aactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattcca 158  Q
     ||  ||||| | |||||||||| ||||||||||||  ||||||||||||||||||||    
T  546956 gacaattgtacgtgacaagttcaccacctccaatttaggaacttcaaagttcattcca 547013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 50 - 175
Target Start/End: Original strand, 570343 - 570468
Alignment:
Q  50 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 149  Q
    |||||||||||| |||||||||||||| || | ||| |||| ||| | |||||||| |||||  ||||||||||||||||| | ||||||||||||||||    
T  570343 ttgcaaaagcccgcgacaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctcgagtttgagaacttcaaag 570442  T
Q  150 ttcattccatgcggtttcactcttga 175  Q
    |||| |||| || |||||||| ||||    
T  570443 ttcaatccacgcagtttcacttttga 570468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 50 - 157
Target Start/End: Complemental strand, 1513514 - 1513407
Alignment:
Q  50 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 149  Q
    |||||||||||||||||||| |||||||||||| || ||| |||||||||||||  |||||   |||||||||||||| || | |||| |||||||||||    
T  1513514 ttgcaaaagcccacgacaacactttgagattacgtagagtgtttcatcatcaacatttgtaaatgacaagttcaacacttctagtttgggaacttcaaag 1513415  T
Q  150 ttcattcc 157  Q
    ||||||||    
T  1513414 ttcattcc 1513407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 53 - 156
Target Start/End: Complemental strand, 8184134 - 8184031
Alignment:
Q  53 caaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttc 152  Q
    ||||||||||| |||||||||||||||| |||| |||  |  |||||||||||||||||| ||||||||||||||||| | |||  ||||||||||||||    
T  8184134 caaaagcccacaacaactctttgagattgcatagagtgctatatcatcaactcttgtatgtgacaagttcaacacctctagtttcggaacttcaaagttc 8184035  T
Q  153 attc 156  Q
    ||||    
T  8184034 attc 8184031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 50 - 161
Target Start/End: Complemental strand, 1537874 - 1537763
Alignment:
Q  50 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 149  Q
    |||||||||||||||||||| ||||||||||||| | ||| |||  |||| |||  ||||||  |||||||||||||| || | |||| |||||||||||    
T  1537874 ttgcaaaagcccacgacaacactttgagattacacacagtgttttgtcattaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaag 1537775  T
Q  150 ttcattccatgc 161  Q
    ||||||||||||    
T  1537774 ttcattccatgc 1537763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 50 - 156
Target Start/End: Complemental strand, 12121564 - 12121458
Alignment:
Q  50 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 149  Q
    ||||||||||||||| |||| ||||||||||||  | ||| |||||||||||||  ||||||  |||||||||||||| || | |||| |||||||||||    
T  12121564 ttgcaaaagcccacggcaacactttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaag 12121465  T
Q  150 ttcattc 156  Q
    |||||||    
T  12121464 ttcattc 12121458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 50 - 223
Target Start/End: Complemental strand, 7225990 - 7225817
Alignment:
Q  50 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 149  Q
    ||||||||| |||| |||||||||||| || |||   |||  ||  ||||||||||||||||| ||||||||||| |||||||||| |||||||||||||    
T  7225990 ttgcaaaagtccacaacaactctttgatatcacacgaagtcctttgtcatcaactcttgtatgtgacaagttcaagacctccaattcgagaacttcaaag 7225891  T
Q  150 ttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 223  Q
    |||||     |  | |||||||||| |||   ||  |||||||| |||||||| ||||||||||||| ||||||    
T  7225890 ttcatgttgcgtagcttcactcttggacagtaggataagttcaaatgtctaatcttacaacatctccgtaaaac 7225817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 216
Target Start/End: Complemental strand, 55908848 - 55908669
Alignment:
Q  37 tttctagagacaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaattt 136  Q
    |||| ||| ||| ||| |||||||||| |||| |||||||||| | ||| ||| ||||||||||||| | |||||| |||||||| |||||||| ||||     
T  55908848 tttccagaaacagttgtaaaagcccacaacaattctttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattc 55908749  T
Q  137 gagaacttcaaagttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctcc 216  Q
      |||||| |||||| |||| | |  ||||||||||||||||   ||  || ||||| |||||||  |||||||||||||    
T  55908748 aggaactttaaagtttattctaagtagtttcactcttgaacagtaggctaaattcaaatgtctaaccttacaacatctcc 55908669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 1508110 - 1508033
Alignment:
Q  50 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacac 127  Q
    |||||||||||||||||||| ||||||||||||| | ||| |||||||||||||  | ||||| ||||||||||||||    
T  1508110 ttgcaaaagcccacgacaacactttgagattacacacagtgtttcatcatcaacattggtatgtgacaagttcaacac 1508033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 51 - 155
Target Start/End: Original strand, 7307853 - 7307957
Alignment:
Q  51 tgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagt 150  Q
    |||||||||| || ||||||||||||||| | |  ||||  |||||||||||||  |||||  ||||||||||| |||||||||||| |||||| |||||    
T  7307853 tgcaaaagcctacaacaactctttgagatcatacgtagtgcttcatcatcaacttctgtatatgacaagttcaatacctccaatttgggaactttaaagt 7307952  T
Q  151 tcatt 155  Q
    |||||    
T  7307953 tcatt 7307957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 92 - 223
Target Start/End: Original strand, 1600453 - 1600584
Alignment:
Q  92 ttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcactcttgaacaaccggtcaagttc 191  Q
    |||||| ||||| |||||||  ||||||||||||||||||| ||| ||||||||||||||||||||  || | |||| | |||||||   ||  ||||||    
T  1600453 ttcatcgtcaacccttgtatatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgggctaagttc 1600552  T
Q  192 aagtgtctaatgttacaacatctccataaaac 223  Q
    || |||||||| ||| || |||||| ||||||    
T  1600553 aaatgtctaattttagaaaatctccttaaaac 1600584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 55 - 176
Target Start/End: Original strand, 532186 - 532307
Alignment:
Q  55 aaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcat 154  Q
    ||||| |||||||| |||||||| | ||||| || |||||||||||||   ||||||  ||||||||||||||||| |  ||| | ||||||||||||||    
T  532186 aaagctcacgacaattctttgaggtcacataaagcttttcatcatcaatgtttgtatatgacaagttcaacacctctagcttggggacttcaaagttcat 532285  T
Q  155 tccatgcggtttcactcttgaa 176  Q
    |||| |  | ||||||||||||    
T  532286 tccaagtagattcactcttgaa 532307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 156
Target Start/End: Complemental strand, 1519203 - 1519143
Alignment:
Q  96 tcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattc 156  Q
    |||||||| |||||||| ||||||||||||||||| | |||| ||||||||||||||||||    
T  1519203 tcatcaacccttgtatgtgacaagttcaacacctctagtttgggaacttcaaagttcattc 1519143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 155
Target Start/End: Original strand, 1545779 - 1545870
Alignment:
Q  64 gacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcatt 155  Q
    ||||| ||||||  |||| ||| ||| ||||||||||||||||||||  | |||||||||||||||||| |||  |||||| ||||||||||    
T  1545779 gacaattctttgttattatataaagtgtttcatcatcaactcttgtaaacaacaagttcaacacctccagtttaggaactttaaagttcatt 1545870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 158
Target Start/End: Complemental strand, 1552873 - 1552766
Alignment:
Q  51 tgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagt 150  Q
    |||||||||||||||||| ||||||| || ||||  ||| ||||||||| ||   ||||||| ||||| |||||||| |||| |||| ||| ||||||||    
T  1552873 tgcaaaagcccacgacaattctttgatatcacattgagtgtttcatcattaatatttgtatgtgacaaattcaacacttccagtttgggaatttcaaagt 1552774  T
Q  151 tcattcca 158  Q
    ||| ||||    
T  1552773 tcagtcca 1552766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 49 - 223
Target Start/End: Complemental strand, 53761878 - 53761706
Alignment:
Q  49 attgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaa 148  Q
    |||||||||||||||||||| |||| ||||| ||| |  |||||  ||| | |||| | |||   |||||||||||| |||| |  ||| ||||| ||||    
T  53761878 attgcaaaagcccacgacaattcttcgagatcacagagtgtttt--atcgttaactttcgtaaatgacaagttcaacgcctctagcttgggaactacaaa 53761781  T
Q  149 gttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 223  Q
    ||||||||||    | ||||||||||||||  |||  |||||||| || ||||||||||||||||||| ||||||    
T  53761780 gttcattccaattagcttcactcttgaacactcggctaagttcaaatgcctaatgttacaacatctccttaaaac 53761706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 222
Target Start/End: Original strand, 659736 - 659873
Alignment:
Q  85 atagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcactcttgaacaaccggt 184  Q
    ||||| |||||| || ||| |||||||| ||||||||||||||||| | |||| |||||||||| || ||| |  |  | ||| |||||||||| | ||     
T  659736 atagtgtttcattattaacacttgtatgtgacaagttcaacacctctagtttgggaacttcaaaatttattactcgtagcttccctcttgaacagcaggc 659835  T
Q  185 caagttcaagtgtctaatgttacaacatctccataaaa 222  Q
     ||||| || | |||||||||||||||||||| |||||    
T  659836 taagtttaaatatctaatgttacaacatctccttaaaa 659873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 223
Target Start/End: Original strand, 640908 - 641080
Alignment:
Q  51 tgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagt 150  Q
    |||||||| ||||| ||| |||||||| | || || ||| |||||||||||||  ||||||  ||||||||||||||||||||| |  | | |||||| |    
T  640908 tgcaaaagaccacggcaattctttgaggtcacgtagagtgtttcatcatcaacgtttgtatctgacaagttcaacacctccaatattggtagttcaaatt 641007  T
Q  151 tcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 223  Q
    |||||||| |  | || ||||    ||||||||  |||||||| |||||||  ||||||||| ||| ||||||    
T  641008 tcattccaagtaggtttactccatcacaaccggctaagttcaaatgtctaacattacaacatatccttaaaac 641080  T

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Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 92 - 156
Target Start/End: Complemental strand, 12116640 - 12116576
Alignment:
Q  92 ttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattc 156  Q
    |||||||||||| |||||||| ||||||||||||||||| || ||  |||| |||||||||||||    
T  12116640 ttcatcatcaacacttgtatgtgacaagttcaacacctctaaatttggaacatcaaagttcattc 12116576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 157
Target Start/End: Complemental strand, 1489468 - 1489361
Alignment:
Q  50 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 149  Q
    ||||||||||||||| |||| | ||||||||||| | ||| |||| |  | |||  ||||||  |||||||||||||| || | |||| |||||||||||    
T  1489468 ttgcaaaagcccacggcaacacattgagattacacacagtgtttcgttgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaag 1489369  T
Q  150 ttcattcc 157  Q
    ||||||||    
T  1489368 ttcattcc 1489361  T

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Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 130
Target Start/End: Complemental strand, 55505219 - 55505135
Alignment:
Q  46 acaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctc 130  Q
    |||| |||||||| ||||||||| |||||||| | ||||| ||| || |||| |||||  ||||||  |||||||||||||||||    
T  55505219 acaaatgcaaaagtccacgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctc 55505135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 12123481 - 12123423
Alignment:
Q  46 acaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaact 104  Q
    ||||||||||||||||||||||||| |||| |||| |||| |||  |||||| ||||||    
T  12123481 acaattgcaaaagcccacgacaactttttgggattgcataaagtgcttcatcgtcaact 12123423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 558493 - 558542
Alignment:
Q  53 caaaagcccacgacaactctttgagattacatatagtttttcatcatcaa 102  Q
    ||||||||||||||||||||||||||| ||||  |||  |||||||||||    
T  558493 caaaagcccacgacaactctttgagatcacatggagtgcttcatcatcaa 558542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 566182 - 566239
Alignment:
Q  51 tgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttg 108  Q
    |||||||||||||||||   ||||||||| ||||| ||| ||||||||||||| ||||    
T  566182 tgcaaaagcccacgacagtactttgagatcacatagagtgtttcatcatcaacgcttg 566239  T

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Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 53 - 223
Target Start/End: Original strand, 6402855 - 6403025
Alignment:
Q  53 caaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttc 152  Q
    ||||||||||| |||| |||||||||| ||||| ||| |||||||||||||  | ||||  |||||||||||||| || | || | ||||| |||||||     
T  6402855 caaaagcccactacaattctttgagatcacatagagtgtttcatcatcaaccttcgtatctgacaagttcaacacttctagttggggaactgcaaagttt 6402954  T
Q  153 attccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 223  Q
    |||||| |  | |||||||||||||| || || |||||||| || ||||||||||||||||||| ||||||    
T  6402955 attccaagtagcttcactcttgaacacccagttaagttcaaatgcctaatgttacaacatctccttaaaac 6403025  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 48 - 178
Target Start/End: Original strand, 6394854 - 6394984
Alignment:
Q  48 aattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaa 147  Q
    |||||||||||||||| |||| |||||||||| ||| | ||  ||||||||||||| |||||||  |||||||||||||||||||  | | ||||| |||    
T  6394854 aattgcaaaagcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaa 6394953  T
Q  148 agttcattccatgcggtttcactcttgaaca 178  Q
    |||||||||||||  |||||||| |||||||    
T  6394954 agttcattccatgtagtttcacttttgaaca 6394984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 50 - 223
Target Start/End: Original strand, 6432153 - 6432326
Alignment:
Q  50 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 149  Q
    ||||| |||||||| |||| ||||| |||| ||||| ||| ||||||||||||| |||||||  |||||||||||||||| ||  ||| |||||||||||    
T  6432153 ttgcagaagcccacaacaattctttaagatcacataaagtgtttcatcatcaacgcttgtatttgacaagttcaacaccttcagcttgggaacttcaaag 6432252  T
Q  150 ttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 223  Q
    |||||||||||  | |||||| ||  ||||  ||  |||||||| ||| |||  ||||||||||||| ||||||    
T  6432253 ttcattccatgtagcttcacttttatacaataggctaagttcaaatgtttaagtttacaacatctccttaaaac 6432326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 65 - 237
Target Start/End: Complemental strand, 6585329 - 6585157
Alignment:
Q  65 acaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggt 164  Q
    ||||||||||||||| ||||| ||| |||||||||||||  ||||||  ||||||||||| |||||||| | |  ||||  |||||| |||||| |  |     
T  6585329 acaactctttgagatcacatagagtgtttcatcatcaacctttgtatctgacaagttcaatacctccaactgggtaactaaaaagtttattccaagtagc 6585230  T
Q  165 ttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaacacaaccaatacctt 237  Q
    |||||||||||||| || || |||||||| || ||||| ||| ||||||||| |||||||  || ||||||||    
T  6585229 ttcactcttgaacacccagtaaagttcaaatgcctaatattaaaacatctccttaaaacatgacaaatacctt 6585157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 170
Target Start/End: Original strand, 12102274 - 12102378
Alignment:
Q  66 caactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtt 165  Q
    ||||||||||| || | ||| |||| ||| | |||||||| |||||| ||||||||||||||||||| |||| ||||||||||||||| ||||||| |||    
T  12102274 caactctttgaaatcagatagagttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttgggaacttcaaagttcaatccatgcagtt 12102373  T
Q  166 tcact 170  Q
    |||||    
T  12102374 tcact 12102378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 50 - 160
Target Start/End: Original strand, 6409998 - 6410108
Alignment:
Q  50 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 149  Q
    ||||||||||| || |||| |||||||||| ||||| ||  ||||||||||||| |||||||  ||| |||||||||||| ||  ||| |||||||||||    
T  6409998 ttgcaaaagccgacaacaattctttgagatcacataaagagtttcatcatcaacgcttgtatttgactagttcaacaccttcagcttgggaacttcaaag 6410097  T
Q  150 ttcattccatg 160  Q
    |||||||||||    
T  6410098 ttcattccatg 6410108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 223
Target Start/End: Complemental strand, 6594709 - 6594540
Alignment:
Q  54 aaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttca 153  Q
    |||||||||| |||| |||||||||| |||  |||| | |||||||||||   |||||  ||||||| ||||||||||| |||| |||||  |||||| |    
T  6594709 aaaagcccacaacaattctttgagatcacacgtagtgtctcatcatcaacctctgtatttgacaagtacaacacctccagtttgggaactaaaaagttta 6594610  T
Q  154 ttccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 223  Q
    |||||||  | |||||||||||||| ||||  |||| ||| ||| |||| ||| ||||||||| ||||||    
T  6594609 ttccatgtagcttcactcttgaacacccggataagtacaaatgtgtaatcttataacatctccttaaaac 6594540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 45 - 237
Target Start/End: Complemental strand, 11936387 - 11936195
Alignment:
Q  45 gacaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaactt 144  Q
    |||| |||||||||||||| |||||||||||||||   ||| |||  || ||| ||||||||||||   ||||||| ||||||||||| |||| ||||||    
T  11936387 gacagttgcaaaagcccactacaactctttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaactt 11936288  T
Q  145 caaagttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaacacaaccaatacctt 237  Q
    ||||||||| |  | |  | |||| ||||||||| |  || || ||||| |||||||||||||||||| ||  |||||||  | |||||||||    
T  11936287 caaagttcaatgtacgtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacatatcattaaaacatgaacaatacctt 11936195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 45 - 237
Target Start/End: Complemental strand, 11948367 - 11948175
Alignment:
Q  45 gacaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaactt 144  Q
    |||| |||||||||||||| |||||||||||||||   ||| |||  || ||| ||||||||||||   ||||||| ||||||||||| |||| ||||||    
T  11948367 gacagttgcaaaagcccactacaactctttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaactt 11948268  T
Q  145 caaagttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaacacaaccaatacctt 237  Q
    ||||||||| |  | |  | |||| ||||||||| |  || || ||||| |||||||||||||||||| ||  |||||||  | |||||||||    
T  11948267 caaagttcaatgtacgtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacatatcattaaaacatgaacaatacctt 11948175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 179
Target Start/End: Original strand, 14820687 - 14820814
Alignment:
Q  52 gcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagtt 151  Q
    |||||||||||| |||| |||| ||||| | ||| ||| |||||| ||||||  ||||||  || |||||||||||||| || ||| ||||| |||||||    
T  14820687 gcaaaagcccacaacaattcttggagatcatataaagtgtttcattatcaacctttgtatttgataagttcaacacctctaacttgggaactgcaaagtt 14820786  T
Q  152 cattccatgcggtttcactcttgaacaa 179  Q
     ||||||||  ||||||||| |||||||    
T  14820787 aattccatgtagtttcactcctgaacaa 14820814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 50 - 155
Target Start/End: Original strand, 6423209 - 6423314
Alignment:
Q  50 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 149  Q
    |||||||| ||||| |||||||||||||||  |||| ||| ||| |||   |||||||||||  |||||||||||||||||||  ||| |||||| ||||    
T  6423209 ttgcaaaatcccacaacaactctttgagatcgcatagagtgttttatcgctaactcttgtatttgacaagttcaacacctccagcttgggaacttaaaag 6423308  T
Q  150 ttcatt 155  Q
    ||||||    
T  6423309 ttcatt 6423314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 237
Target Start/End: Complemental strand, 7994289 - 7994102
Alignment:
Q  50 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 149  Q
    ||||||||| |||  |||| |||||||||| ||||||||| |||| |||| ||| |||||||  |||| |||||||||||| |  ||  ||||| |||||    
T  7994289 ttgcaaaagtccagaacaattctttgagatcacatatagtgtttcgtcattaacccttgtatttgacatgttcaacacctctagcttcggaactacaaag 7994190  T
Q  150 ttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaacacaaccaatacctt 237  Q
    ||||||||  |  | |||||||||| |||| |||  | |||||| || || || ||||||||| ||| ||||||  ||| ||||||||    
T  7994189 ttcattcctagtagcttcactcttgtacaatcggctatgttcaaatgcctgatcttacaacatttccttaaaacgtaacaaatacctt 7994102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 160
Target Start/End: Original strand, 6415958 - 6416068
Alignment:
Q  50 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 149  Q
    |||||||||||| | |||| |||||||||| ||||| ||  ||| ||||| |||  ||||||  |||||||||||||||||||  ||| ||||| |||||    
T  6415958 ttgcaaaagcccgctacaattctttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaag 6416057  T
Q  150 ttcattccatg 160  Q
    | |||||||||    
T  6416058 tccattccatg 6416068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 223
Target Start/End: Original strand, 7119152 - 7119322
Alignment:
Q  53 caaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttc 152  Q
    ||||||||| | |||| |||| ||||| ||||  ||| |||||||||||||  | ||||  |||||||||||||||||||  | | ||||  ||||||||    
T  7119152 caaaagcccgcaacaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggtgaacaacaaagttc 7119251  T
Q  153 attccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 223  Q
    |||||| |  | ||||||||||||||   ||  |||||||| ||| |||| ||| ||||||||| ||||||    
T  7119252 attccaagtagcttcactcttgaacagtgggctaagttcaaatgtttaatcttagaacatctccttaaaac 7119322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 223
Target Start/End: Original strand, 7131630 - 7131800
Alignment:
Q  53 caaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttc 152  Q
    ||||||||| | |||| |||| ||||| ||||  ||| |||||||||||||  | ||||  |||||||||||||||||||  | | ||||  ||||||||    
T  7131630 caaaagcccgcaacaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggcgaacaacaaagttc 7131729  T
Q  153 attccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 223  Q
    |||||| |  | ||||||||||||||   ||  |||||||| ||| |||| ||| ||||||||| ||||||    
T  7131730 attccaagtagcttcactcttgaacagtgggctaagttcaaatgtttaatcttagaacatctccttaaaac 7131800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 159
Target Start/End: Original strand, 9411347 - 9411456
Alignment:
Q  50 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 149  Q
    ||||||||| ||||||||| ||||||||||  |||| ||| |||||||   ||| | |||||  |||||||||||||||||||  ||| |||| ||||||    
T  9411347 ttgcaaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctccagcttgggaacctcaaag 9411446  T
Q  150 ttcattccat 159  Q
    |||| |||||    
T  9411447 ttcaatccat 9411456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 160
Target Start/End: Original strand, 14818376 - 14818484
Alignment:
Q  52 gcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagtt 151  Q
    |||||||||||  |||| |||| ||||| | ||| ||| |||||| ||||||  ||||||  || |||||||||||||| || ||||||||| |||||||    
T  14818376 gcaaaagcccagaacaattcttggagatcatataaagtgtttcattatcaacctttgtatttgataagttcaacacctctaacttgagaactgcaaagtt 14818475  T
Q  152 cattccatg 160  Q
     ||||||||    
T  14818476 aattccatg 14818484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 130
Target Start/End: Original strand, 19632431 - 19632511
Alignment:
Q  50 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctc 130  Q
    |||||||||||||| |||| |||||||||| ||| | ||||  |||||||||||  |||||| |||||||| |||||||||    
T  19632431 ttgcaaaagcccacaacaattctttgagatcacaaaaagttgctcatcatcaacctttgtatacgacaagtccaacacctc 19632511  T

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Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 151
Target Start/End: Original strand, 14802331 - 14802429
Alignment:
Q  53 caaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagtt 151  Q
    |||||| |||| |||| ||||||| || ||||| ||| |||||||||||||  ||||||  ||||| |||||||| ||||  ||| |||||||||||||    
T  14802331 caaaagaccacaacaattctttgaaatcacatagagtgtttcatcatcaacctttgtatttgacaaattcaacacttccatcttgggaacttcaaagtt 14802429  T

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Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 132
Target Start/End: Complemental strand, 10579840 - 10579761
Alignment:
Q  53 caaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctcca 132  Q
    |||||||| || |||| ||||||||||   ||| ||| ||| |||||||||| ||||||  |||||||||||||||||||    
T  10579840 caaaagccgacaacaattctttgagatcgaatagagtgttttatcatcaacttttgtatatgacaagttcaacacctcca 10579761  T

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Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 155
Target Start/End: Original strand, 28935083 - 28935146
Alignment:
Q  92 ttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcatt 155  Q
    |||||| |||||||||||||| ||||||||||||||||| | || | |||| ||||| ||||||    
T  28935083 ttcatcgtcaactcttgtatgtgacaagttcaacacctcgagttggggaacatcaaacttcatt 28935146  T

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Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 178
Target Start/End: Original strand, 6426501 - 6426631
Alignment:
Q  48 aattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaa 147  Q
    |||||||||| || || |||| ||||||||||  |||| |   ||||||||||||  ||||| |  ||||| |||||||||||||  | | ||||| |||    
T  6426501 aattgcaaaatccgacaacaattctttgagatcgcataaaaagtttcatcatcaatgcttgtgtttgacaaattcaacacctccagctcgggaactgcaa 6426600  T
Q  148 agttcattccatgcggtttcactcttgaaca 178  Q
    |||||||||||||  |||||||  |||||||    
T  6426601 agttcattccatgtagtttcacgtttgaaca 6426631  T

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Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 158
Target Start/End: Complemental strand, 6589408 - 6589322
Alignment:
Q  72 tttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattcca 158  Q
    |||||||| | ||||||| ||| ||||| |||  ||||||  |||||||||||||||||||   || ||||| ||||||||||||||    
T  6589408 tttgagatcagatatagtgttttatcattaacatttgtatttgacaagttcaacacctccagcatgggaactacaaagttcattcca 6589322  T

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Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 129
Target Start/End: Complemental strand, 6603306 - 6603230
Alignment:
Q  53 caaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacct 129  Q
    |||||||||| ||||||||||||||||  |||| | | ||||||||||||| | |||||  | ||||| ||||||||    
T  6603306 caaaagcccaggacaactctttgagatcgcatagactgtttcatcatcaacacctgtatctgccaagtccaacacct 6603230  T

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Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 50 - 224
Target Start/End: Complemental strand, 45245192 - 45245018
Alignment:
Q  50 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 149  Q
    |||||||||||||||||||||||||||||| ||||  ||| |||||||||||||  |||| |  ||||| ||||||||||| | |||  |||||||||||    
T  45245192 ttgcaaaagcccacgacaactctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacacctcaagttttggaacttcaaag 45245093  T
Q  150 ttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaaca 224  Q
    || |||||| |   || || ||||||||| |     ||||| || || ||||||||||||||||||| |||||||    
T  45245092 tttattccacgtaattccagtcttgaacagcaaactaagtttaaatgcctaatgttacaacatctccttaaaaca 45245018  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 223
Target Start/End: Complemental strand, 1037784 - 1037598
Alignment:
Q  37 tttctagagacaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaattt 136  Q
    |||| ||| ||| ||| |||||||||| |||| |||||||||| | ||| ||| ||||||||||||| | |||||| |||||||| |||||||| ||||     
T  1037784 tttccagaaacagttgtaaaagcccacaacaattctttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattc 1037685  T
Q  137 gagaacttcaaagttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 223  Q
      |||||| |||||| |||| | |  |||||||||||||| |   ||  || ||||| |||||||  ||||||||||||| ||||||    
T  1037684 aggaactttaaagtttattctaagtagtttcactcttgaatagtaggctaaattcaaatgtctaaccttacaacatctccttaaaac 1037598  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 156
Target Start/End: Complemental strand, 32785876 - 32785773
Alignment:
Q  53 caaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttc 152  Q
    |||||||||| || ||||  ||||||| ||||| |||  ||||||||||| ||||||||| ||||||||||||||||| | |||| || ||| |||||||    
T  32785876 caaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagctttaaagttc 32785777  T
Q  153 attc 156  Q
    ||||    
T  32785776 attc 32785773  T

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Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 59 - 155
Target Start/End: Original strand, 52082582 - 52082678
Alignment:
Q  59 cccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcatt 155  Q
    ||||| ||||||||||||||| ||||| | | |||||||||||| | |||| |  ||||||||||||||||||||||||  ||||| ||||||||||    
T  52082582 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 52082678  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 178
Target Start/End: Complemental strand, 19468608 - 19468478
Alignment:
Q  48 aattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaa 147  Q
    |||| |||||| |||| |||  |||||||||| ||||| ||| |||||||||||||  ||||||  ||||| |||||||||||||  ||| ||||| |||    
T  19468608 aattccaaaagtccacaacagttctttgagatcacataaagtgtttcatcatcaacctttgtatctgacaacttcaacacctccagcttgggaactacaa 19468509  T
Q  148 agttcattccatgcggtttcactcttgaaca 178  Q
    |||||| |||| |  | ||||||||||||||    
T  19468508 agttcactccaagtagattcactcttgaaca 19468478  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 155
Target Start/End: Original strand, 52092776 - 52092874
Alignment:
Q  57 agcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcatt 155  Q
    ||||||| | ||||||||||||| ||||| | | | |||||||||| | |||| |  | ||||||||||||||||||||||  ||||| ||||||||||    
T  52092776 agcccacaaaaactctttgagatcacatacaatgtgtcatcatcaatttttgtctttgccaagttcaacacctccaatttggaaacttgaaagttcatt 52092874  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 50 - 223
Target Start/End: Complemental strand, 15092258 - 15092085
Alignment:
Q  50 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 149  Q
    |||||||||||||| |||| ||||||||||  |||| ||| ||| ||||| |||  |||| |  ||||| |||||||||||||  | | ||||| |||||    
T  15092258 ttgcaaaagcccacaacaattctttgagatcgcatagagtgttttatcattaacctttgtttctgacaaattcaacacctccagctcgggaactgcaaag 15092159  T
Q  150 ttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 223  Q
    |||||||||||  ||||||| ||| |||| || || |||||||| ||| |||  ||| ||||| ||| ||||||    
T  15092158 ttcattccatgtagtttcacacttaaacatccagttaagttcaaatgtttaagcttataacatttccttaaaac 15092085  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 237
Target Start/End: Original strand, 7977615 - 7977757
Alignment:
Q  95 atcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcactcttgaacaaccggtcaagttcaag 194  Q
    |||||||||| ||||||| |||||||||||  |||| | ||||  ||| || || ||||||||| |  | ||||| |||||||||| ||  | ||| ||     
T  7977615 atcatcaactgttgtatgtgacaagttcaaagcctcgagtttgcaaacgtcgaatttcattccacgtagattcacccttgaacaacaggctaggtttaaa 7977714  T
Q  195 tgtctaatgttacaacatctccataaaacacaaccaatacctt 237  Q
    |||||||||||||||||||||| ||||||   |||||||||||    
T  7977715 tgtctaatgttacaacatctccttaaaacttgaccaatacctt 7977757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 223
Target Start/End: Original strand, 10614585 - 10614758
Alignment:
Q  50 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 149  Q
    |||||||||||||| |||  |||| ||||| ||||| ||| ||| ||||| |||  | ||||  |||||||||||||||||||  ||| ||||  ||| |    
T  10614585 ttgcaaaagcccactacagttcttcgagatcacatagagtgttttatcattaaccttcgtatttgacaagttcaacacctccagattgggaacaacaacg 10614684  T
Q  150 ttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 223  Q
    ||||||||| |  | |||||| ||  ||||  ||  |||||||| || ||||| ||||||||| ||| ||||||    
T  10614685 ttcattccaagtagcttcacttttttacaataggctaagttcaaatgcctaatcttacaacatatccttaaaac 10614758  T

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Target: scaffold0295 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 178
Target Start/End: Complemental strand, 724 - 603
Alignment:
Q  57 agcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattc 156  Q
    ||||||| |||| |||| ||||| | ||| ||| |||||||||| || |||||||| |||||||| |||||||| ||||   |||||| |||||| ||||    
T  724 agcccacaacaattcttcgagatcatatagagtgtttcatcatcgacacttgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattc 625  T
Q  157 catgcggtttcactcttgaaca 178  Q
     | |  ||||||||||||||||    
T  624 taagtagtttcactcttgaaca 603  T

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Target: scaffold0041 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 130
Target Start/End: Original strand, 39177 - 39256
Alignment:
Q  51 tgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctc 130  Q
    ||||||||||||| ||||||||||||||| ||||| ||| ||||||||| |||  |||||   | |||||||||||||||    
T  39177 tgcaaaagcccactacaactctttgagatcacataaagtgtttcatcattaacctttgtaaatgtcaagttcaacacctc 39256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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