View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10690_low_1 (Length: 385)
Name: NF10690_low_1
Description: NF10690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10690_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 375
Target Start/End: Original strand, 38133892 - 38134249
Alignment:
| Q |
18 |
gtccggaaatcataccacatattaagcccatccgttttcttttggattttgttacggagacatcctcccactagtagtaattcttacacacactcacaca |
117 |
Q |
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| T |
38133892 |
gtccggaaatcttaccacatattaagcccatccgttttcttttggattttgttacggagacatcctcccactagtagtaattcttacacacactcacaca |
38133991 |
T |
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| Q |
118 |
cgattaacaaaaggtaccagttcttaaatatacacataaactgaacttgtagagaagatccaggtgacatactagcatcatgggattcaaacaacctgcg |
217 |
Q |
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| T |
38133992 |
cgattaacaaaaggtaccagttcttaaatatacacataaactgaacttgtagagaagatccaggtgacatactagcatcatgggattcaaacaacctgcg |
38134091 |
T |
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| Q |
218 |
gctccctcgtcccaaatgcatgatttccgtgaatgtaaaaattggcacttccttgcttccttcattgaccaggcatgatttttctccccacagcagaata |
317 |
Q |
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| T |
38134092 |
gctccctcgtcccaaatgcatgatttccgtgaatgtaaaaattggcacttccttgcttccttcattgaccaggcatgatttttctccccacagcagaata |
38134191 |
T |
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| Q |
318 |
acaaatctcattgaagccttcaaatcaaacgtttttgcaatccgattaaacatctctg |
375 |
Q |
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| T |
38134192 |
acaaatctcattgaagccttcaaatcaaacgcttttgcaatccgattaaacatttctg |
38134249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 277 - 370
Target Start/End: Original strand, 38121794 - 38121887
Alignment:
| Q |
277 |
cttcattgaccaggcatgatttttctccccacagcagaataacaaatctcattgaagccttcaaatcaaacgtttttgcaatccgattaaacat |
370 |
Q |
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| T |
38121794 |
cttcattgacaaggcttgatttttctccccaaagcagaataataaatctgattgaggtcttcaaataaaatggttttgcaatctgattatacat |
38121887 |
T |
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