View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10690_low_3 (Length: 296)

Name: NF10690_low_3
Description: NF10690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10690_low_3
NF10690_low_3
[»] chr3 (2 HSPs)
chr3 (17-287)||(9359224-9359494)
chr3 (227-272)||(53112066-53112111)
[»] chr8 (2 HSPs)
chr8 (74-285)||(32915190-32915401)
chr8 (179-282)||(24945364-24945467)
[»] chr1 (1 HSPs)
chr1 (85-285)||(2308149-2308349)
[»] scaffold0001 (1 HSPs)
scaffold0001 (88-282)||(520028-520222)
[»] chr7 (1 HSPs)
chr7 (66-161)||(43805529-43805624)
[»] chr2 (1 HSPs)
chr2 (236-279)||(41195218-41195261)
[»] chr4 (4 HSPs)
chr4 (86-120)||(26209499-26209533)
chr4 (204-276)||(5451215-5451287)
chr4 (86-118)||(26232059-26232091)
chr4 (188-276)||(51091117-51091205)


Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 17 - 287
Target Start/End: Original strand, 9359224 - 9359494
Alignment:
Q  17 cacagagtacagaccaccaaaaagcaaacagcaacataaaacagctccaaaaccaattacttccttaatagacattcttgtggattccaattccattcat 116  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9359224 cacagaggacagaccaccaaaaagcaaacagcaacaaaaaacagctccaaaaccaattacttccttaatagacattcttgtggattccaattccattcat 9359323  T
Q  117 aatataagcatgtttgcatatcaagcctagacaaactccaccgccttgaattaacaacaatctccgacaagagatcatccacatgcttcacctcatttcg 216  Q
    ||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9359324 aatataagcatgtttgcatatcaagcctatacaaactccaccgccacgaattaacaacaatctccgacaaaagatcatccacatgcttcacctcatttcg 9359423  T
Q  217 gaagatcatatgattcctagcttgccaaatagcccaaatagttgcatgccaaataatccacaaccctttgc 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9359424 gaagatcatatgattcctagcttgccaaatagcccaaatagttgcatgccaaataatccacaaccccttgc 9359494  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 53112066 - 53112111
Alignment:
Q  227 tgattcctagcttgccaaatagcccaaatagttgcatgccaaataa 272  Q
    ||||||||||||||||||||| ||||||  ||||||||||| ||||    
T  53112066 tgattcctagcttgccaaataccccaaaccgttgcatgccatataa 53112111  T

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Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 74 - 285
Target Start/End: Original strand, 32915190 - 32915401
Alignment:
Q  74 tacttccttaatagacattcttgtggattccaattccattcataatataagcatgtttgcatatcaagcctagacaaactccaccgccttgaattaacaa 173  Q
    ||||||||  ||||||||||||| ||||||||||||||||||||| |||| |||| ||| ||||  |||||| ||||||||||||||| ||||||||| |    
T  32915190 tacttcctcgatagacattcttgaggattccaattccattcataaaataaacatgcttgtatattcagcctacacaaactccaccgccatgaattaacca 32915289  T
Q  174 caatctccgacaagagatcatccacatgcttcacctcatttcggaagatcatatgattcctagcttgccaaatagcccaaatagttgcatgccaaataat 273  Q
    |||| |||| ||| |||||||||||||| ||||||||||| || || |||| ||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  32915290 caatttccgccaaaagatcatccacatgtttcacctcattacgaaaaatcaaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatgat 32915389  T
Q  274 ccacaacccttt 285  Q
    |||||| |||||    
T  32915390 ccacaaaccttt 32915401  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 179 - 282
Target Start/End: Complemental strand, 24945467 - 24945364
Alignment:
Q  179 tccgacaagagatcatccacatgcttcacctcatttcggaagatcatatgattcctagcttgccaaatagcccaaatagttgcatgccaaataatccaca 278  Q
    |||||||| | |||||||||||  ||||||||||| ||||| ||   |||||| |||||||||||||| | |||||||||||||||||||||||||||||    
T  24945467 tccgacaataaatcatccacatatttcacctcattccggaaaatacaatgatttctagcttgccaaattgaccaaatagttgcatgccaaataatccaca 24945368  T
Q  279 accc 282  Q
    ||||    
T  24945367 accc 24945364  T

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Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 85 - 285
Target Start/End: Complemental strand, 2308349 - 2308149
Alignment:
Q  85 tagacattcttgtggattccaattccattcataatataagcatgtttgcatatcaagcctagacaaactccaccgccttgaattaacaacaatctccgac 184  Q
    |||||||||||| |||||||||||||||||||||||||  || |||||||||| ||| |||||||||||||||| || |||||| || |||||||||| |    
T  2308349 tagacattcttgaggattccaattccattcataatatagacaggtttgcatattaagtctagacaaactccacctccatgaatttaccacaatctccgcc 2308250  T
Q  185 aagagatcatccacatgcttcacctcatttcggaagatcatatgattcctagcttgccaaatagcccaaatagttgcatgccaaataatccacaaccctt 284  Q
    || | ||| ||||||||  | ||||||||  |||| |||  ||| ||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||    
T  2308249 aaaatatcttccacatgtattacctcattaaggaaaatcgaatggttcctcgcttgccaaatagcccatatagttgcatgccaaatgatccacaaacctt 2308150  T
Q  285 t 285  Q
    |    
T  2308149 t 2308149  T

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Target: scaffold0001 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 88 - 282
Target Start/End: Original strand, 520028 - 520222
Alignment:
Q  88 acattcttgtggattccaattccattcataatataagcatgtttgcatatcaagcctagacaaactccaccgccttgaattaacaacaatctccgacaag 187  Q
    ||||||||| |||||||||||||||||||| ||||  || ||||||||| ||||||||| ||||| ||||||||| ||    || |  || ||||||||     
T  520028 acattcttgaggattccaattccattcatagtatagacaagtttgcataacaagcctagtcaaacaccaccgcctcgacaacaccattatttccgacaat 520127  T
Q  188 agatcatccacatgcttcacctcatttcggaagatcatatgattcctagcttgccaaatagcccaaatagttgcatgccaaataatccacaaccc 282  Q
    |  |||||||||   ||||||||||| ||||| || | |||||| || ||||||||||| | |||||||||||||| ||||||||||| ||||||    
T  520128 aattcatccacagatttcacctcattccggaatataaaatgatttctcgcttgccaaattgaccaaatagttgcatcccaaataatccccaaccc 520222  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 66 - 161
Target Start/End: Complemental strand, 43805624 - 43805529
Alignment:
Q  66 aaaccaattacttccttaatagacattcttgtggattccaattccattcataatataagcatgtttgcatatcaagcctagacaaactccaccgcc 161  Q
    ||||||| |||||||| || || || ||||| ||||||||| | |||||||||||||| || |||||||||| ||||||| |||||||||||||||    
T  43805624 aaaccaactacttcctcaaaaggcactcttgaggattccaacttcattcataatataaacaagtttgcatattaagcctatacaaactccaccgcc 43805529  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 279
Target Start/End: Original strand, 41195218 - 41195261
Alignment:
Q  236 gcttgccaaatagcccaaatagttgcatgccaaataatccacaa 279  Q
    |||||||||||| |||||||||| ||||||||||||||||||||    
T  41195218 gcttgccaaataacccaaatagtagcatgccaaataatccacaa 41195261  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 120
Target Start/End: Complemental strand, 26209533 - 26209499
Alignment:
Q  86 agacattcttgtggattccaattccattcataata 120  Q
    ||||||||||||||||||||| |||||||||||||    
T  26209533 agacattcttgtggattccaactccattcataata 26209499  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 276
Target Start/End: Original strand, 5451215 - 5451287
Alignment:
Q  204 tcacctcatttcggaagatcatatgattcctagcttgccaaatagcccaaatagttgcatgccaaataatcca 276  Q
    |||||||||||||||  || | |||||||||| ||||| ||||| |  |||| |||| |||||||||||||||    
T  5451215 tcacctcatttcggacaataacatgattcctaacttgctaaataacttaaattgttgtatgccaaataatcca 5451287  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 118
Target Start/End: Complemental strand, 26232091 - 26232059
Alignment:
Q  86 agacattcttgtggattccaattccattcataa 118  Q
    ||||||||||||||||||||| |||||||||||    
T  26232091 agacattcttgtggattccaactccattcataa 26232059  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 276
Target Start/End: Complemental strand, 51091205 - 51091117
Alignment:
Q  188 agatcatccacatgcttcacctcatttcggaagatcatatgattcctagcttgccaaatagcccaaatagttgcatgccaaataatcca 276  Q
    ||||| |||||||  ||||| ||||| || || || || ||||||||| |||||||||   || ||||||||||||||||||| |||||    
T  51091205 agatcttccacatatttcacatcattccgaaaaataatgtgattcctaacttgccaaaggaccaaaatagttgcatgccaaatcatcca 51091117  T

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