View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10690_low_5 (Length: 238)
Name: NF10690_low_5
Description: NF10690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10690_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 15 - 225
Target Start/End: Original strand, 46552873 - 46553083
Alignment:
| Q |
15 |
ggtatattgaaataaaacaacatttacaaccaaactgaggtagaacatatgaaaccctaaatcagatccgaaataaggtgccatttattttacaccacca |
114 |
Q |
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| T |
46552873 |
ggtatactaaaataaagcaacatttacaaccaaactcaggtagaacatatgaaaccctaaatcagatccgaaataaggtgccatttattttacaccacca |
46552972 |
T |
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| Q |
115 |
aatggaatgtcccaaattataccactgagaagctagtgataacattctcccacgtaaacgtaaagaacttcagaatctcaaaattaaaaattaaaaccta |
214 |
Q |
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| T |
46552973 |
aatggaatgtcccaaattacaccactaagaagctagtgataacattctcccacgtaaacgtaaagaacttcaaaatctcaaaattaaaaatttaaaccta |
46553072 |
T |
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| Q |
215 |
tagtaataact |
225 |
Q |
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||||||||||| |
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| T |
46553073 |
tagtaataact |
46553083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 142 - 223
Target Start/End: Complemental strand, 28830658 - 28830577
Alignment:
| Q |
142 |
agaagctagtgataacattctcccacgtaaacgtaaagaacttcagaatctcaaaattaaaaattaaaacctatagtaataa |
223 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||| |
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| T |
28830658 |
agaagctagtgataatattctcccacgtaaacgtaaagaactttagaatctcaagattaaaaattaaaaactatagtaataa |
28830577 |
T |
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