View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10691_high_1 (Length: 570)
Name: NF10691_high_1
Description: NF10691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10691_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 191 - 540
Target Start/End: Complemental strand, 22366225 - 22365873
Alignment:
| Q |
191 |
cataagcagcttctatgaacgccatttcttcttcgctaacaatttcaattggaatattatta---ttgttgaatgaggatgtttcggccatgtttgtgtt |
287 |
Q |
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| T |
22366225 |
cataagctgcttctatgaacgccatttcttcttcgctaacaatttcaattggaatattattaacgttgttggatgaggatgtttcggccatgtttgtgtt |
22366126 |
T |
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| Q |
288 |
ctttcctttgaccaaa-caaaaaacacaatccttgttctaagtgaaaaatgaccgttgaaaatgccgtgtatttttgggtttcaaattgattgttattca |
386 |
Q |
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| T |
22366125 |
ctttcctttgaccaaaacaaaaaatacaatc-ttgttg-aagtaaaaaatgaccgttgaaaatggcgtgtatttttgggtttcaaattgattgttattca |
22366028 |
T |
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| Q |
387 |
cttcaccgcacggaagggacactcaatgcttcaacctttttccttattcaagtaaaaagtagaaagaaccaagcttctcctataaacaatcaaacatggc |
486 |
Q |
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| T |
22366027 |
cttcaccgcacggaagggacactcaatgcttcaacctttttctttgttcaagtaaaaagaagaaagaaccaagcttctcctgtaaacaatcaaacatggc |
22365928 |
T |
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| Q |
487 |
cacgagttattgattttttacagggttaaacatgcttttcatc-ctataaatata |
540 |
Q |
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| T |
22365927 |
cacgagttattgattttttagagggttaaatatgcttttcatctctataaatata |
22365873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 22366404 - 22366301
Alignment:
| Q |
18 |
aacagtatcttcaatgtcaccagcacatgatgatgaagatgaagat------agtcttggtttagatacaagagtaattgagttaatggaaattgcattg |
111 |
Q |
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| T |
22366404 |
aacagtatcttcaatgtcaccagcacatgatgatgaagatgaagatgaagatagtcttcgtttagatacaagagtaattgagttaatggaaattgcattg |
22366305 |
T |
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| Q |
112 |
ttgt |
115 |
Q |
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|||| |
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| T |
22366304 |
ttgt |
22366301 |
T |
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