View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10691_high_12 (Length: 237)

Name: NF10691_high_12
Description: NF10691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10691_high_12
NF10691_high_12
[»] chr8 (3 HSPs)
chr8 (1-173)||(31210722-31210892)
chr8 (1-126)||(30390178-30390302)
chr8 (37-126)||(5957210-5957299)
[»] chr7 (3 HSPs)
chr7 (1-202)||(20074442-20074649)
chr7 (67-123)||(5532423-5532479)
chr7 (68-100)||(47957416-47957448)
[»] chr1 (1 HSPs)
chr1 (1-148)||(2355908-2356052)
[»] chr3 (4 HSPs)
chr3 (66-126)||(4860038-4860098)
chr3 (66-126)||(4880046-4880106)
chr3 (31-126)||(31464704-31464797)
chr3 (1-123)||(11589315-11589436)
[»] chr6 (1 HSPs)
chr6 (1-93)||(14949528-14949619)
[»] chr4 (1 HSPs)
chr4 (67-126)||(48084378-48084437)
[»] chr2 (1 HSPs)
chr2 (67-124)||(13424420-13424477)


Alignment Details
Target: chr8 (Bit Score: 134; Significance: 7e-70; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 31210722 - 31210892
Alignment:
Q  1 agatccctcctgttttctgtagtgccctactatccacctttaattatactctctcttattttttgatattacaaacacattatctcacctatttaatgga 100  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||||||  | || |||||||||||||||||||||||||||||||||||||||    
T  31210722 agatccctcctgttttctgcagtgccctactatccatctttaattatactctct--tgttgtttgatattacaaacacattatctcacctatttaatgga 31210819  T
Q  101 gtgcttggattacacatgagagaaaaccatataagacaatctcctcccatagtctaaaccatgcaaatatgat 173  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  31210820 gtgcttggattgcacatgagagaaaaccacataagacaatctcctcccattgtctaaaccatgcaaatatgat 31210892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 30390178 - 30390302
Alignment:
Q  1 agatccctcctgttttctgtagtgccctactatccacctttaattatactctctcttattttttgatattacaaacacattatctcacctatttaatgga 100  Q
    ||||||||| ||||||||   |||||  || ||||||||||||||| ||||||||||  ||||   ||||||| ||||||| | ||||||||||||||||    
T  30390178 agatccctcatgttttctccggtgcctaacaatccacctttaattacactctctcttccttttat-tattacagacacattctatcacctatttaatgga 30390276  T
Q  101 gtgcttggattacacatgagagaaaa 126  Q
    | |||| |||||||||||||||||||    
T  30390277 gggcttagattacacatgagagaaaa 30390302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 126
Target Start/End: Complemental strand, 5957299 - 5957210
Alignment:
Q  37 cctttaattatactctctcttattttttgatattacaaacacattatctcacctatttaatggagtgcttggattacacatgagagaaaa 126  Q
    |||||||||| ||||| |||   |||||  ||||||||||||||| ||||||||||||||| ||| ||||  ||| ||||||||||||||    
T  5957299 cctttaattacactctttctccctttttattattacaaacacattctctcacctatttaatagagggcttatatttcacatgagagaaaa 5957210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 20074442 - 20074649
Alignment:
Q  1 agatccctcctgttttctgtagtgccctactatccacctttaattatactctctcttattttttgatattacaaacacattatctcac----ctatttaa 96  Q
    |||||||||| ||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    ||||||||    
T  20074442 agatccctccggttttctatagcgccctactatccacctttaattatattctctcttattttttgatattacaaacacattatctcacgcacctatttaa 20074541  T
Q  97 tggagtgcttggattacacatgagagaaaaccatataagacaatctcctcccatagtctaaaccatgcaaatatgat--gtcaatatgccgtaaaataaa 194  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||| |    | |||||| ||||||||||||||  ||||||||| ||| |||||||    
T  20074542 tggagtacttggattatacatgagagaaaaccatataagacaatctccccatggaatctaaagcatgcaaatatgataagtcaatatggcgtgaaataaa 20074641  T
Q  195 ctgccatg 202  Q
    ||||||||    
T  20074642 ctgccatg 20074649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 5532423 - 5532479
Alignment:
Q  67 tattacaaacacattatctcacctatttaatggagtgcttggattacacatgagaga 123  Q
    ||||||||||||||| ||||||||||||||||||  |||| ||||||||| ||||||    
T  5532423 tattacaaacacattctctcacctatttaatggatggcttagattacacacgagaga 5532479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 100
Target Start/End: Complemental strand, 47957448 - 47957416
Alignment:
Q  68 attacaaacacattatctcacctatttaatgga 100  Q
    |||||||||||||||| ||||||||||||||||    
T  47957448 attacaaacacattatttcacctatttaatgga 47957416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 2356052 - 2355908
Alignment:
Q  1 agatccctcctgttttctgtag-tgccctactatccacctttaattatactctctcttattttttgatattacaaacacattatctcacctatttaatgg 99  Q
    ||||||||||||||||||| || | ||| |||||||| ||||||||| | | | |    |||||  ||||||||||||||||||||||||||| || |||    
T  2356052 agatccctcctgttttctgcagctcccccactatccagctttaattacatttttt----tttttatatattacaaacacattatctcacctatctattgg 2355957  T
Q  100 agtgcttggattacacatgagagaaaaccatataagacaatctcctccc 148  Q
    || |  |||||||||||||| ||||||||| | ||||||||||||||||    
T  2355956 agggtctggattacacatgaaagaaaaccagagaagacaatctcctccc 2355908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 4860098 - 4860038
Alignment:
Q  66 atattacaaacacattatctcacctatttaatggagtgcttggattacacatgagagaaaa 126  Q
    ||||||||||||||||||||||| |||||||||||| |  |||||||||||||||||||||    
T  4860098 atattacaaacacattatctcacatatttaatggagggtctggattacacatgagagaaaa 4860038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 4880106 - 4880046
Alignment:
Q  66 atattacaaacacattatctcacctatttaatggagtgcttggattacacatgagagaaaa 126  Q
    ||||||||||||||||||||||| |||||||||||| |  |||||||||||||||||||||    
T  4880106 atattacaaacacattatctcacatatttaatggagggtctggattacacatgagagaaaa 4880046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 126
Target Start/End: Original strand, 31464704 - 31464797
Alignment:
Q  31 tatccacctttaattatactctctcttattttttgatattacaaacacattatctcacctatttaatggagtgcttggattacacatgagagaaaa 126  Q
    ||||||||||| |||||||| |||  |  |||||  ||||||||||| | | |||||||||||||||||||  ||| |||||||||||||| ||||    
T  31464704 tatccacctttgattatactatct--tcctttttattattacaaacatactttctcacctatttaatggaggacttagattacacatgagataaaa 31464797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 11589436 - 11589315
Alignment:
Q  1 agatccctcctgttttctgtagtgccctactatccacctttaattatactctctcttattttttgatattacaaacacattatctcacctatttaatgga 100  Q
    ||||| |||||||||||||  ||| || |  ||||||||||||||| |||||||||   ||||| ||| ||||| || ||  |||||||||||| |||||    
T  11589436 agatctctcctgttttctgctgtggcccatcatccacctttaattacactctctctccctttttaataatacaa-catatcgtctcacctatttgatgga 11589338  T
Q  101 gtgcttggattacacatgagaga 123  Q
    | |  | ||||||||||||||||    
T  11589337 gggtctcgattacacatgagaga 11589315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 14949619 - 14949528
Alignment:
Q  1 agatccctcctgttttctgtagtgccctactat--ccacctttaattatactctctcttattttttgatattacaaacacattatctcacctatt 93  Q
    ||||||||||| | ||||| ||||||| |||||  ||||||||||||| |||||| |||  ||||||||||||||||||||||||||||| ||||    
T  14949619 agatccctcctatcttctggagtgccccactatatccacctttaattacactctc-ctt--tttttgatattacaaacacattatctcacttatt 14949528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 126
Target Start/End: Complemental strand, 48084437 - 48084378
Alignment:
Q  67 tattacaaacacattatctcacctatttaatggagtgcttggattacacatgagagaaaa 126  Q
    ||||||||||||||| ||| | |||||||||||||  ||| |||||||||| ||||||||    
T  48084437 tattacaaacacattttctaatctatttaatggaggacttagattacacatcagagaaaa 48084378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 13424477 - 13424420
Alignment:
Q  67 tattacaaacacattatctcacctatttaatggagtgcttggattacacatgagagaa 124  Q
    ||||||||||||||| | ||||| ||||||||||| |||| ||||||| | |||||||    
T  13424477 tattacaaacacattctttcaccaatttaatggagggcttagattacatacgagagaa 13424420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University