View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10691_high_2 (Length: 352)

Name: NF10691_high_2
Description: NF10691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10691_high_2
NF10691_high_2
[»] chr3 (9 HSPs)
chr3 (45-342)||(28193447-28193743)
chr3 (214-342)||(49799217-49799345)
chr3 (214-342)||(19229086-19229214)
chr3 (107-159)||(19961163-19961215)
chr3 (219-254)||(49799093-49799128)
chr3 (107-160)||(37919187-37919240)
chr3 (226-254)||(19228969-19228997)
chr3 (107-151)||(25134175-25134219)
chr3 (113-173)||(39430295-39430355)
[»] chr8 (12 HSPs)
chr8 (214-342)||(5720627-5720755)
chr8 (214-342)||(43468980-43469108)
chr8 (214-336)||(18874084-18874206)
chr8 (113-172)||(7774631-7774690)
chr8 (113-172)||(7791278-7791337)
chr8 (113-172)||(7811862-7811921)
chr8 (113-172)||(8867217-8867276)
chr8 (215-254)||(18873962-18874001)
chr8 (214-261)||(43469190-43469237)
chr8 (107-153)||(8769084-8769130)
chr8 (107-173)||(40505320-40505386)
chr8 (214-254)||(5720498-5720538)
[»] chr4 (8 HSPs)
chr4 (214-342)||(33496279-33496407)
chr4 (119-173)||(27918402-27918456)
chr4 (214-254)||(33496150-33496190)
chr4 (113-173)||(42051178-42051238)
chr4 (138-172)||(39260057-39260091)
chr4 (171-200)||(4544890-4544919)
chr4 (166-194)||(28264857-28264885)
chr4 (113-157)||(53850146-53850190)
[»] chr5 (8 HSPs)
chr5 (214-342)||(33003078-33003206)
chr5 (214-342)||(42262952-42263080)
chr5 (215-342)||(35155140-35155267)
chr5 (226-321)||(35861380-35861475)
chr5 (214-254)||(35155356-35155396)
chr5 (107-170)||(10523684-10523747)
chr5 (214-253)||(33002949-33002988)
chr5 (226-254)||(35861246-35861274)
[»] chr1 (6 HSPs)
chr1 (214-342)||(49594939-49595066)
chr1 (265-328)||(16506318-16506381)
chr1 (265-328)||(22354714-22354777)
chr1 (120-160)||(29033017-29033057)
chr1 (214-254)||(49595155-49595195)
chr1 (172-200)||(48669689-48669717)
[»] chr2 (9 HSPs)
chr2 (233-342)||(17270161-17270270)
chr2 (107-172)||(41890053-41890118)
chr2 (108-160)||(20061134-20061186)
chr2 (107-159)||(32294590-32294642)
chr2 (118-170)||(44068851-44068903)
chr2 (106-169)||(14275783-14275846)
chr2 (214-252)||(17270361-17270399)
chr2 (107-169)||(25626319-25626381)
chr2 (167-200)||(1106856-1106889)
[»] scaffold0482 (1 HSPs)
scaffold0482 (113-172)||(576-635)
[»] scaffold0328 (1 HSPs)
scaffold0328 (113-172)||(12442-12501)
[»] chr7 (5 HSPs)
chr7 (107-173)||(32786819-32786885)
chr7 (107-173)||(28337233-28337299)
chr7 (172-200)||(30972208-30972236)
chr7 (116-160)||(39837480-39837524)
chr7 (172-200)||(43968164-43968192)
[»] scaffold0116 (2 HSPs)
scaffold0116 (107-172)||(3029-3094)
scaffold0116 (107-172)||(6070-6135)
[»] chr6 (6 HSPs)
chr6 (118-172)||(2831398-2831452)
chr6 (107-173)||(30249173-30249239)
chr6 (113-173)||(2614367-2614427)
chr6 (118-170)||(6469619-6469671)
chr6 (113-173)||(8504503-8504563)
chr6 (113-173)||(29286004-29286064)
[»] scaffold1986 (1 HSPs)
scaffold1986 (214-247)||(245-278)
[»] scaffold0004 (1 HSPs)
scaffold0004 (171-200)||(218671-218700)


Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 45 - 342
Target Start/End: Complemental strand, 28193743 - 28193447
Alignment:
Q  45 ggcaaatgctaacttatgctctcaagggtattaaacaactaattatatattttttgacaaaattaagcaactaattatagaaatgtatgtatcaaaagtt 144  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  28193743 ggcaaatgctaacttatgctctcaagggcattagacaactaattatat-ttttttgacaaaattaagcaactaattatggaaatgtatgtatcaaaagtc 28193645  T
Q  145 gtgcattcaacttcttcaaaattaaaataggtcaaatgcatctaaaggtctttaagnnnnnnnnnnnngccaaagtggttcttttagtttttgaatcgtt 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||    
T  28193644 gtgcattcaacttcttcaaaattaaaataggtcaaatgcatctaaaggtctttaagttttttgtttttgccaaagtggttcttttagtttttgaatcgtt 28193545  T
Q  245 tcagaatcattcattccctctgaaagctaggcaacaatggtctatgaataaactcttctccattaccttcttcactttgttcagatggttgacctttg 342  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  28193544 tcagaatcattccttccctctgaaagctaggcaacaatggtctatgaatgaactcttctccattaccttcttcactttgttcagatggttgaactttg 28193447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 214 - 342
Target Start/End: Complemental strand, 49799345 - 49799217
Alignment:
Q  214 ccaaagtggttcttttagtttttgaatcgtttcagaatcattcattccctctgaaagctaggcaacaatggtctatgaataaactcttctccattacctt 313  Q
    |||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49799345 ccaaagtggtccttttagtttttgaatcgtttcagaatcatactttccctctgaaagctaggcaacaatggtctatgaataaactcttctccattacctt 49799246  T
Q  314 cttcactttgttcagatggttgacctttg 342  Q
    ||||||||||||||| ||||||| |||||    
T  49799245 cttcactttgttcagttggttgaactttg 49799217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 214 - 342
Target Start/End: Complemental strand, 19229214 - 19229086
Alignment:
Q  214 ccaaagtggttcttttagtttttgaatcgtttcagaatcattcattccctctgaaagctaggcaacaatggtctatgaataaactcttctccattacctt 313  Q
    |||||||||| ||||||||||||||||||||||||||||||   |||||||||||| |||||||||||| |||||||||||||||||||||||||| |||    
T  19229214 ccaaagtggtccttttagtttttgaatcgtttcagaatcatattttccctctgaaacctaggcaacaatagtctatgaataaactcttctccattatctt 19229115  T
Q  314 cttcactttgttcagatggttgacctttg 342  Q
    ||||||||||||||| ||||||| |||||    
T  19229114 cttcactttgttcagttggttgaactttg 19229086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 107 - 159
Target Start/End: Original strand, 19961163 - 19961215
Alignment:
Q  107 ttaagcaactaattatagaaatgtatgtatcaaaagttgtgcattcaacttct 159  Q
    ||||| |||||||||||||||| || ||||||||||||||| |||||||||||    
T  19961163 ttaaggaactaattatagaaatatacgtatcaaaagttgtgtattcaacttct 19961215  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 254
Target Start/End: Original strand, 49799093 - 49799128
Alignment:
Q  219 gtggttcttttagtttttgaatcgtttcagaatcat 254  Q
    ||||| ||||||||||||||||||||||||||||||    
T  49799093 gtggtccttttagtttttgaatcgtttcagaatcat 49799128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 37919187 - 37919240
Alignment:
Q  107 ttaagcaactaattatagaaatgtatgtatcaaaagttgtgcattcaacttctt 160  Q
    ||||| |||| |||||| |||| || ||||||||| ||||||||||||||||||    
T  37919187 ttaagaaactcattatataaatatacgtatcaaaaattgtgcattcaacttctt 37919240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 254
Target Start/End: Original strand, 19228969 - 19228997
Alignment:
Q  226 ttttagtttttgaatcgtttcagaatcat 254  Q
    |||||||||||||||||||||||||||||    
T  19228969 ttttagtttttgaatcgtttcagaatcat 19228997  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 25134219 - 25134175
Alignment:
Q  107 ttaagcaactaattatagaaatgtatgtatcaaaagttgtgcatt 151  Q
    ||||| |||| ||||||||||| |||||||||||||| |||||||    
T  25134219 ttaaggaactcattatagaaatatatgtatcaaaagtcgtgcatt 25134175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 39430295 - 39430355
Alignment:
Q  113 aactaattatagaaatgtatgtatcaaaagttgtgcattcaacttcttcaaaattaaaata 173  Q
    |||| ||||||||||  |||||||||||||| ||||| |||||||||  ||| ||||||||    
T  39430295 aactcattatagaaacatatgtatcaaaagtcgtgcagtcaacttctaaaaagttaaaata 39430355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 214 - 342
Target Start/End: Complemental strand, 5720755 - 5720627
Alignment:
Q  214 ccaaagtggttcttttagtttttgaatcgtttcagaatcattcattccctctgaaagctaggcaacaatggtctatgaataaactcttctccattacctt 313  Q
    |||||||||| |||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5720755 ccaaagtggtccttttagtttttgaatcgtttcagaatcatactttccctctaaaagctaggcaacaatggtctatgaataaactcttctccattacctt 5720656  T
Q  314 cttcactttgttcagatggttgacctttg 342  Q
    ||||||||||||||| ||||||| |||||    
T  5720655 cttcactttgttcagttggttgaactttg 5720627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 214 - 342
Target Start/End: Original strand, 43468980 - 43469108
Alignment:
Q  214 ccaaagtggttcttttagtttttgaatcgtttcagaatcattcattccctctgaaagctaggcaacaatggtctatgaataaactcttctccattacctt 313  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||    
T  43468980 ccaaagtggttcttttagtttttgaatcgtttcagaatcatactttccctctgaaagctaggcagcaatggtctatgagtaaactcttccccattacctt 43469079  T
Q  314 cttcactttgttcagatggttgacctttg 342  Q
    ||||||||||||||| ||||||| |||||    
T  43469080 cttcactttgttcagttggttgaactttg 43469108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 214 - 336
Target Start/End: Complemental strand, 18874206 - 18874084
Alignment:
Q  214 ccaaagtggttcttttagtttttgaatcgtttcagaatcattcattccctctgaaagctaggcaacaatggtctatgaataaactcttctccattacctt 313  Q
    |||||||||| ||||||||||||||||||||||||||||||   |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  18874206 ccaaagtggtccttttagtttttgaatcgtttcagaatcatattttccctttgaaagctaggcaacaatggtctatgaataaattcttctccattacctt 18874107  T
Q  314 cttcactttgttcagatggttga 336  Q
    ||||||||||||||| |||||||    
T  18874106 cttcactttgttcagttggttga 18874084  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 7774631 - 7774690
Alignment:
Q  113 aactaattatagaaatgtatgtatcaaaagttgtgcattcaacttcttcaaaattaaaat 172  Q
    |||| ||||||||||| |||||||||||||| |||||||||||||||| || ||||||||    
T  7774631 aactcattatagaaatatatgtatcaaaagtcgtgcattcaacttcttaaacattaaaat 7774690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 7791278 - 7791337
Alignment:
Q  113 aactaattatagaaatgtatgtatcaaaagttgtgcattcaacttcttcaaaattaaaat 172  Q
    |||| ||||||||||| |||||||||||||| |||||||||||||||| || ||||||||    
T  7791278 aactcattatagaaatatatgtatcaaaagtcgtgcattcaacttcttaaacattaaaat 7791337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 7811862 - 7811921
Alignment:
Q  113 aactaattatagaaatgtatgtatcaaaagttgtgcattcaacttcttcaaaattaaaat 172  Q
    |||| ||||||||||| |||||||||||||| |||||||||||||||| || ||||||||    
T  7811862 aactcattatagaaatatatgtatcaaaagtcgtgcattcaacttcttaaacattaaaat 7811921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 8867217 - 8867276
Alignment:
Q  113 aactaattatagaaatgtatgtatcaaaagttgtgcattcaacttcttcaaaattaaaat 172  Q
    |||| ||||||||||| || | |||||||||||||||||||||||||| |||||||||||    
T  8867217 aactcattatagaaatatacgcatcaaaagttgtgcattcaacttcttaaaaattaaaat 8867276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 18873962 - 18874001
Alignment:
Q  215 caaagtggttcttttagtttttgaatcgtttcagaatcat 254  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  18873962 caaagtggtccttttagtttttgaatcgtttcagaatcat 18874001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 43469237 - 43469190
Alignment:
Q  214 ccaaagtggttcttttagtttttgaatcgtttcagaatcattcattcc 261  Q
    ||||||||||  |||||||||||||||||||||| |||||||| ||||    
T  43469237 ccaaagtggtcattttagtttttgaatcgtttcaaaatcattctttcc 43469190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 153
Target Start/End: Complemental strand, 8769130 - 8769084
Alignment:
Q  107 ttaagcaactaattatagaaatgtatgtatcaaaagttgtgcattca 153  Q
    ||||| |||| ||||||||||| ||||||| ||||||||||||||||    
T  8769130 ttaaggaactcattatagaaatatatgtataaaaagttgtgcattca 8769084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 173
Target Start/End: Complemental strand, 40505386 - 40505320
Alignment:
Q  107 ttaagcaactaattatagaaatgtatgtatcaaaagttgtgcattcaacttcttcaaaattaaaata 173  Q
    ||||| |||| |||||  |||| ||| |||||||||| |||||||||||||||| ||| ||||||||    
T  40505386 ttaaggaactcattatgaaaatatatatatcaaaagtcgtgcattcaacttcttaaaagttaaaata 40505320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 5720498 - 5720538
Alignment:
Q  214 ccaaagtggttcttttagtttttgaatcgtttcagaatcat 254  Q
    ||||||||||  |||||||||||||||| ||||||||||||    
T  5720498 ccaaagtggtcattttagtttttgaatcatttcagaatcat 5720538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 5e-50; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 214 - 342
Target Start/End: Complemental strand, 33496407 - 33496279
Alignment:
Q  214 ccaaagtggttcttttagtttttgaatcgtttcagaatcattcattccctctgaaagctaggcaacaatggtctatgaataaactcttctccattacctt 313  Q
    |||||||||| ||||||| |||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33496407 ccaaagtggtccttttagcttttgaatcgtttcagaatcatacttttcctctgaaagctaggcaacaatggtctatgaataaactcttctccattacctt 33496308  T
Q  314 cttcactttgttcagatggttgacctttg 342  Q
    ||||||||||||||| ||||||| |||||    
T  33496307 cttcactttgttcagttggttgaactttg 33496279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 27918456 - 27918402
Alignment:
Q  119 ttatagaaatgtatgtatcaaaagttgtgcattcaacttcttcaaaattaaaata 173  Q
    |||||||||| |||||||||||||| ||||||| |||||||| ||| ||||||||    
T  27918456 ttatagaaatatatgtatcaaaagtcgtgcattaaacttcttaaaagttaaaata 27918402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 33496150 - 33496190
Alignment:
Q  214 ccaaagtggttcttttagtttttgaatcgtttcagaatcat 254  Q
    |||||||| | ||||||||||||||||||||||||||||||    
T  33496150 ccaaagtgatccttttagtttttgaatcgtttcagaatcat 33496190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 42051238 - 42051178
Alignment:
Q  113 aactaattatagaaatgtatgtatcaaaagttgtgcattcaacttcttcaaaattaaaata 173  Q
    |||| |||||| |||| |||||||||||||| ||||||||||||| || ||| ||||||||    
T  42051238 aactcattataaaaatatatgtatcaaaagtcgtgcattcaacttgttaaaagttaaaata 42051178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 172
Target Start/End: Original strand, 39260057 - 39260091
Alignment:
Q  138 aaaagttgtgcattcaacttcttcaaaattaaaat 172  Q
    ||||||||||||||||||||||| |||||||||||    
T  39260057 aaaagttgtgcattcaacttcttaaaaattaaaat 39260091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 200
Target Start/End: Original strand, 4544890 - 4544919
Alignment:
Q  171 ataggtcaaatgcatctaaaggtctttaag 200  Q
    ||||||||||||||||||||||||||||||    
T  4544890 ataggtcaaatgcatctaaaggtctttaag 4544919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 194
Target Start/End: Complemental strand, 28264885 - 28264857
Alignment:
Q  166 ttaaaataggtcaaatgcatctaaaggtc 194  Q
    |||||||||||||||||||||||||||||    
T  28264885 ttaaaataggtcaaatgcatctaaaggtc 28264857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 157
Target Start/End: Complemental strand, 53850190 - 53850146
Alignment:
Q  113 aactaattatagaaatgtatgtatcaaaagttgtgcattcaactt 157  Q
    |||| |||| ||||||| ||||||||||||| |||||||||||||    
T  53850190 aacttattaaagaaatgcatgtatcaaaagtcgtgcattcaactt 53850146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 214 - 342
Target Start/End: Complemental strand, 33003206 - 33003078
Alignment:
Q  214 ccaaagtggttcttttagtttttgaatcgtttcagaatcattcattccctctgaaagctaggcaacaatggtctatgaataaactcttctccattacctt 313  Q
    |||||||||| ||||||||||||||||||||| ||||||||   || ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  33003206 ccaaagtggtccttttagtttttgaatcgttttagaatcatatttttcctctgaaagctacgcaacaatggtctatgaataaactcttctccattacctt 33003107  T
Q  314 cttcactttgttcagatggttgacctttg 342  Q
    ||||||||||||||| ||||||| |||||    
T  33003106 cttcactttgttcagttggttgaactttg 33003078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 214 - 342
Target Start/End: Complemental strand, 42263080 - 42262952
Alignment:
Q  214 ccaaagtggttcttttagtttttgaatcgtttcagaatcattcattccctctgaaagctaggcaacaatggtctatgaataaactcttctccattacctt 313  Q
    ||||| |||| ||||||||||||||||||||||||||||||   ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42263080 ccaaaatggtccttttagtttttgaatcgtttcagaatcatgttttccctccgaaagctaggcaacaatggtctatgaataaactcttctccattacctt 42262981  T
Q  314 cttcactttgttcagatggttgacctttg 342  Q
    ||||||||||||||  ||||||| |||||    
T  42262980 cttcactttgttcaattggttgaactttg 42262952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 215 - 342
Target Start/End: Original strand, 35155140 - 35155267
Alignment:
Q  215 caaagtggttcttttagtttttgaatcgtttcagaatcattcattccctctgaaagctaggcaacaatggtctatgaataaactcttctccattaccttc 314  Q
    |||||||||  ||||| |||||||||||||| |||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  35155140 caaagtggtcgttttaatttttgaatcgttttagaatcatactttccctctgaaagctaggcaacaatggtctacgaataaactcttctccattaccttc 35155239  T
Q  315 ttcactttgttcagatggttgacctttg 342  Q
    |||||||||||||| ||||||| |||||    
T  35155240 ttcactttgttcagttggttgaactttg 35155267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 226 - 321
Target Start/End: Complemental strand, 35861475 - 35861380
Alignment:
Q  226 ttttagtttttgaatcgtttcagaatcattcattccctctgaaagctaggcaacaatggtctatgaataaactcttctccattaccttcttcactt 321  Q
    ||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35861475 ttttagtttttgaatcgtttcagaatcatactttccctctgaaagttaggcaacaatggtctatgaataaactcttctccattaccatcttcactt 35861380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 35155396 - 35155356
Alignment:
Q  214 ccaaagtggttcttttagtttttgaatcgtttcagaatcat 254  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  35155396 ccaaagtggtccttttagtttttgaatcgtttcagaatcat 35155356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 107 - 170
Target Start/End: Original strand, 10523684 - 10523747
Alignment:
Q  107 ttaagcaactaattatagaaatgtatgtatcaaaagttgtgcattcaacttcttcaaaattaaa 170  Q
    ||||| |||| ||||||||||| || ||||||||||| |||||||||| ||||| ||| |||||    
T  10523684 ttaaggaactcattatagaaatatacgtatcaaaagtcgtgcattcaatttcttaaaagttaaa 10523747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 253
Target Start/End: Original strand, 33002949 - 33002988
Alignment:
Q  214 ccaaagtggttcttttagtttttgaatcgtttcagaatca 253  Q
    ||||| |||| |||||||||||||||||||||||||||||    
T  33002949 ccaaaatggtccttttagtttttgaatcgtttcagaatca 33002988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 254
Target Start/End: Original strand, 35861246 - 35861274
Alignment:
Q  226 ttttagtttttgaatcgtttcagaatcat 254  Q
    |||||||||||||||||||||||||||||    
T  35861246 ttttagtttttgaatcgtttcagaatcat 35861274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 8e-43; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 214 - 342
Target Start/End: Original strand, 49594939 - 49595066
Alignment:
Q  214 ccaaagtggttcttttagtttttgaatcgtttcagaatcattcattccctctgaaagctaggcaacaatggtctatgaataaactcttctccattacctt 313  Q
    |||||||||| ||||||||||||||||||||||| ||||||   |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  49594939 ccaaagtggtccttttagtttttgaatcgtttcataatcatat-ttccctctgaaacctaggcaacaatggtctatgaataaactcttctccattacctt 49595037  T
Q  314 cttcactttgttcagatggttgacctttg 342  Q
     |||||||||||||| ||||||| |||||    
T  49595038 attcactttgttcagttggttgaactttg 49595066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 265 - 328
Target Start/End: Original strand, 16506318 - 16506381
Alignment:
Q  265 tgaaagctaggcaacaatggtctatgaataaactcttctccattaccttcttcactttgttcag 328  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16506318 tgaaagctaggcaacaatggtctatgaataaactcttcttcattaccttcttcactttgttcag 16506381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 265 - 328
Target Start/End: Complemental strand, 22354777 - 22354714
Alignment:
Q  265 tgaaagctaggcaacaatggtctatgaataaactcttctccattaccttcttcactttgttcag 328  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  22354777 tgaaagctaggcaacaatggtctatgaataaactcttcttcattaccttcttcactttgttcag 22354714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 160
Target Start/End: Complemental strand, 29033057 - 29033017
Alignment:
Q  120 tatagaaatgtatgtatcaaaagttgtgcattcaacttctt 160  Q
    ||||||||| || ||||||||||||||||||||||||||||    
T  29033057 tatagaaatatacgtatcaaaagttgtgcattcaacttctt 29033017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 49595195 - 49595155
Alignment:
Q  214 ccaaagtggttcttttagtttttgaatcgtttcagaatcat 254  Q
    ||||||||||  |||||||||||||||||||||||||||||    
T  49595195 ccaaagtggtcattttagtttttgaatcgtttcagaatcat 49595155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 200
Target Start/End: Complemental strand, 48669717 - 48669689
Alignment:
Q  172 taggtcaaatgcatctaaaggtctttaag 200  Q
    |||||||||||||||||||||||||||||    
T  48669717 taggtcaaatgcatctaaaggtctttaag 48669689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 5e-41; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 233 - 342
Target Start/End: Original strand, 17270161 - 17270270
Alignment:
Q  233 ttttgaatcgtttcagaatcattcattccctctgaaagctaggcaacaatggtctatgaataaactcttctccattaccttcttcactttgttcagatgg 332  Q
    |||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  17270161 ttttgaatcgtttcagaatcatactttccctctgaaacctaggcaacaatggtctatgaacaaactcttctccattaccttcttcactttgttcagttgg 17270260  T
Q  333 ttgacctttg 342  Q
    |||| |||||    
T  17270261 ttgaactttg 17270270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 172
Target Start/End: Complemental strand, 41890118 - 41890053
Alignment:
Q  107 ttaagcaactaattatagaaatgtatgtatcaaaagttgtgcattcaacttcttcaaaattaaaat 172  Q
    ||||| |||| ||||||||||| || | ||||||||| |||||||||||||||| |||||||||||    
T  41890118 ttaagaaacttattatagaaatatacgcatcaaaagtcgtgcattcaacttcttaaaaattaaaat 41890053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 20061186 - 20061134
Alignment:
Q  108 taagcaactaattatagaaatgtatgtatcaaaagttgtgcattcaacttctt 160  Q
    |||| |||| ||||||||||| || ||||||||||||||||||||||||||||    
T  20061186 taaggaactcattatagaaatatacgtatcaaaagttgtgcattcaacttctt 20061134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 32294642 - 32294590
Alignment:
Q  107 ttaagcaactaattatagaaatgtatgtatcaaaagttgtgcattcaacttct 159  Q
    ||||| |||| ||||||||||| ||||||| |||||| |||||||||||||||    
T  32294642 ttaaggaactcattatagaaatatatgtattaaaagtcgtgcattcaacttct 32294590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 44068903 - 44068851
Alignment:
Q  118 attatagaaatgtatgtatcaaaagttgtgcattcaacttcttcaaaattaaa 170  Q
    ||||||||||| |||||||||||||| ||||| |||||||||| ||| |||||    
T  44068903 attatagaaatatatgtatcaaaagtcgtgcaatcaacttcttaaaagttaaa 44068851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 14275783 - 14275846
Alignment:
Q  106 attaagcaactaattatagaaatgtatgtatcaaaagttgtgcattcaacttcttcaaaattaa 169  Q
    |||||| |||| ||||||||||| || |||||||||||  ||||||||||||||| ||| ||||    
T  14275783 attaaggaactcattatagaaatatacgtatcaaaagtcatgcattcaacttcttaaaagttaa 14275846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 17270399 - 17270361
Alignment:
Q  214 ccaaagtggttcttttagtttttgaatcgtttcagaatc 252  Q
    ||||||||||| ||||||||||||||| |||||||||||    
T  17270399 ccaaagtggtttttttagtttttgaattgtttcagaatc 17270361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 169
Target Start/End: Complemental strand, 25626381 - 25626319
Alignment:
Q  107 ttaagcaactaattatagaaatgtatgtatcaaaagttgtgcattcaacttcttcaaaattaa 169  Q
    ||||| |||| ||||||||||| || ||||||||||| || ||||||||||||| ||| ||||    
T  25626381 ttaaggaacttattatagaaatatacgtatcaaaagtcgtacattcaacttcttaaaagttaa 25626319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 200
Target Start/End: Complemental strand, 1106889 - 1106856
Alignment:
Q  167 taaaataggtcaaatgcatctaaaggtctttaag 200  Q
    ||||| ||||||||||||||||||||||||||||    
T  1106889 taaaaaaggtcaaatgcatctaaaggtctttaag 1106856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 635 - 576
Alignment:
Q  113 aactaattatagaaatgtatgtatcaaaagttgtgcattcaacttcttcaaaattaaaat 172  Q
    |||| ||||||||||| |||||||||||||| |||||||||||||||| || ||||||||    
T  635 aactcattatagaaatatatgtatcaaaagtcgtgcattcaacttcttaaacattaaaat 576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 12442 - 12501
Alignment:
Q  113 aactaattatagaaatgtatgtatcaaaagttgtgcattcaacttcttcaaaattaaaat 172  Q
    ||||||||||| |||| || |||||||||||||||||||||||||||| |||| ||||||    
T  12442 aactaattataaaaatatacgtatcaaaagttgtgcattcaacttcttaaaaactaaaat 12501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 32786819 - 32786885
Alignment:
Q  107 ttaagcaactaattatagaaatgtatgtatcaaaagttgtgcattcaacttcttcaaaattaaaata 173  Q
    ||||| |||| |||||| |||| || ||||||||||| |||||||||||||||| ||| ||||||||    
T  32786819 ttaaggaactcattatataaatatacgtatcaaaagtcgtgcattcaacttcttaaaagttaaaata 32786885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 28337233 - 28337299
Alignment:
Q  107 ttaagcaactaattatagaaatgtatgtatcaaaagttgtgcattcaacttcttcaaaattaaaata 173  Q
    ||||| |||| ||||||||||| ||||||| |||| | ||||| |||||||||| ||| ||||||||    
T  28337233 ttaagaaactcattatagaaatatatgtataaaaaatcgtgcaatcaacttcttaaaagttaaaata 28337299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 200
Target Start/End: Complemental strand, 30972236 - 30972208
Alignment:
Q  172 taggtcaaatgcatctaaaggtctttaag 200  Q
    |||||||||||||||||||||||||||||    
T  30972236 taggtcaaatgcatctaaaggtctttaag 30972208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 39837524 - 39837480
Alignment:
Q  116 taattatagaaatgtatgtatcaaaagttgtgcattcaacttctt 160  Q
    |||||||||||||  | ||||||||||| ||||||||||||||||    
T  39837524 taattatagaaatacacgtatcaaaagtcgtgcattcaacttctt 39837480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 200
Target Start/End: Original strand, 43968164 - 43968192
Alignment:
Q  172 taggtcaaatgcatctaaaggtctttaag 200  Q
    |||||||||||||||||||||||||||||    
T  43968164 taggtcaaatgcatctaaaggtctttaag 43968192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 107 - 172
Target Start/End: Complemental strand, 3094 - 3029
Alignment:
Q  107 ttaagcaactaattatagaaatgtatgtatcaaaagttgtgcattcaacttcttcaaaattaaaat 172  Q
    ||||| |||| |||||||| || ||||||||||||||  ||||||||||||||| ||| |||||||    
T  3094 ttaaggaactcattatagatatatatgtatcaaaagtcatgcattcaacttcttaaaagttaaaat 3029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 107 - 172
Target Start/End: Complemental strand, 6135 - 6070
Alignment:
Q  107 ttaagcaactaattatagaaatgtatgtatcaaaagttgtgcattcaacttcttcaaaattaaaat 172  Q
    ||||| |||| |||||||| || ||||||||||||||  || |||||||||||| |||||||||||    
T  6135 ttaaggaactcattatagatatatatgtatcaaaagtcatggattcaacttcttaaaaattaaaat 6070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 2831398 - 2831452
Alignment:
Q  118 attatagaaatgtatgtatcaaaagttgtgcattcaacttcttcaaaattaaaat 172  Q
    ||||||||||| |||| |||| | || |||||||||||||||| |||||||||||    
T  2831398 attatagaaatatatgcatcacaggtcgtgcattcaacttcttaaaaattaaaat 2831452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 30249173 - 30249239
Alignment:
Q  107 ttaagcaactaattatagaaatgtatgtatcaaaagttgtgcattcaacttcttcaaaattaaaata 173  Q
    ||||| |||| ||||||||||| || ||||||||| | ||||| |||||||||| ||| ||||||||    
T  30249173 ttaaggaactcattatagaaatataggtatcaaaattcgtgcagtcaacttcttaaaagttaaaata 30249239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 2614427 - 2614367
Alignment:
Q  113 aactaattatagaaatgtatgtatcaaaagttgtgcattcaacttcttcaaaattaaaata 173  Q
    |||| |||||| |||| || ||||||||||| |||||||||||||||  ||| ||||||||    
T  2614427 aacttattataaaaatatacgtatcaaaagtcgtgcattcaacttctaaaaagttaaaata 2614367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 6469671 - 6469619
Alignment:
Q  118 attatagaaatgtatgtatcaaaagttgtgcattcaacttcttcaaaattaaa 170  Q
    ||||||||||| ||| ||| |||||| ||||| |||||||||| |||||||||    
T  6469671 attatagaaatatatttattaaaagtcgtgcagtcaacttcttaaaaattaaa 6469619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 8504503 - 8504563
Alignment:
Q  113 aactaattatagaaatgtatgtatcaaaagttgtgcattcaacttcttcaaaattaaaata 173  Q
    |||| ||||| ||||  ||| ||| ||||||||||||||||| ||||| ||||||||||||    
T  8504503 aactcattatcgaaacatatatattaaaagttgtgcattcaatttcttaaaaattaaaata 8504563  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 29286004 - 29286064
Alignment:
Q  113 aactaattatagaaatgtatgtatcaaaagttgtgcattcaacttcttcaaaattaaaata 173  Q
    |||| ||||||||||| || |||| |||| | |||||||||||||||| ||| ||||||||    
T  29286004 aactcattatagaaatatacgtataaaaaatcgtgcattcaacttcttaaaatttaaaata 29286064  T

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Target: scaffold1986 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1986
Description:

Target: scaffold1986; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 247
Target Start/End: Complemental strand, 278 - 245
Alignment:
Q  214 ccaaagtggttcttttagtttttgaatcgtttca 247  Q
    |||||||||| |||||||||||||||||||||||    
T  278 ccaaagtggtccttttagtttttgaatcgtttca 245  T

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Target: scaffold0004 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 200
Target Start/End: Original strand, 218671 - 218700
Alignment:
Q  171 ataggtcaaatgcatctaaaggtctttaag 200  Q
    ||||||||||||||||||||||||||||||    
T  218671 ataggtcaaatgcatctaaaggtctttaag 218700  T

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