View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10691_high_3 (Length: 350)
Name: NF10691_high_3
Description: NF10691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10691_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 30 - 342
Target Start/End: Complemental strand, 28193074 - 28192762
Alignment:
| Q |
30 |
taattgaaaaaatcttaggggacaagaaaaagataaaggaaatttaagtcatggaacaactaataagtactactaggagtagtagatagaattgaagtca |
129 |
Q |
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|||||||||||||||||||| ||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28193074 |
taattgaaaaaatcttagggaacaagaaaaagataaagtaaatttaagtcccgtaacaactaataagtactactaggagtagtagatagaattgaagtca |
28192975 |
T |
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| Q |
130 |
ataattaatatcctcatgagaatagaccagcccctatgacaaaatttaccaaaaatgtgtcccttggttaccaagcaaggaaggagagtcactcattttc |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28192974 |
ataattaatatcctcatgagaatagaccagcccctatgac-aaatttaccaaaaatgtgtcccttggttaccaagcaaggaaggagagtcactcattttc |
28192876 |
T |
|
| Q |
230 |
aaattcttttgtttg-ttttttacaacaattattatttgcaacttcttttctctcccaatgtagctatatcataacacgtgtttgacttgccagcatctt |
328 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28192875 |
aaattcttttgtttgtttttttacaacaattattatttgcaacttcttttctctcccaatgtagctatatcataacacgtgtttgacttgccagcatctt |
28192776 |
T |
|
| Q |
329 |
tatttgcctatgct |
342 |
Q |
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||||||||| |||| |
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| T |
28192775 |
tatttgcctttgct |
28192762 |
T |
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