View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10691_high_5 (Length: 282)

Name: NF10691_high_5
Description: NF10691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10691_high_5
NF10691_high_5
[»] chr3 (5 HSPs)
chr3 (31-266)||(31702667-31702902)
chr3 (21-159)||(31652418-31652556)
chr3 (181-266)||(31652636-31652725)
chr3 (44-91)||(28887381-28887428)
chr3 (48-93)||(17105259-17105304)
[»] chr6 (2 HSPs)
chr6 (37-93)||(29236244-29236300)
chr6 (61-94)||(10338619-10338652)
[»] chr8 (2 HSPs)
chr8 (48-90)||(12170590-12170632)
chr8 (48-90)||(12415018-12415060)
[»] chr5 (1 HSPs)
chr5 (61-102)||(28735820-28735862)
[»] chr2 (2 HSPs)
chr2 (32-93)||(16047687-16047747)
chr2 (61-93)||(22556248-22556280)


Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 31 - 266
Target Start/End: Original strand, 31702667 - 31702902
Alignment:
Q  31 tgacacaacactgatatatagacaccaatgataatttaagaaaatagtagtgattgaatgtaatatatgtgtcatttttaaacatcatcacgtgtcgaac 130  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||    
T  31702667 tgacacaacactgatatatagacaccaataataatttaagaaaatagtagtgattgaatgtaatatatgtgtcgttgttagacatcatcacgtgtcgaac 31702766  T
Q  131 aacatacatgtcttcaatctaaaacgtcaactctacgaatctaaagcgcgatcatgattttttctatgcagatagcaattaaaatatttggaaaaatgct 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  31702767 aacatacatgtcttcaatctaaaacgtcaactctacgaatctaaagggtgatcatgattttttctatgcagatagcaattcaaatatttggaaatatgct 31702866  T
Q  231 ttatcgtcctgggacagattgtttaacagaatttcc 266  Q
    ||||||||||||||||||||||||||||||||||||    
T  31702867 ttatcgtcctgggacagattgtttaacagaatttcc 31702902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 159
Target Start/End: Original strand, 31652418 - 31652556
Alignment:
Q  21 cacagatacatgacacaacactgatatatagacaccaatgataatttaagaaaatagtagtgattgaatgtaatatatgtgtcatttttaaacatcatca 120  Q
    |||||| || |||||||||||||  | |||| |||| || ||||||||||||||||| |||||||||||||||||||  | || || | | ||| |||||    
T  31652418 cacagacacctgacacaacactgtcacatagtcaccgataataatttaagaaaatagaagtgattgaatgtaatatacttttcgttgtcagacaccatca 31652517  T
Q  121 cgtgtcgaacaacatacatgtcttcaatctaaaacgtca 159  Q
    ||||||| |||| || ||||| ||||||||||| |||||    
T  31652518 cgtgtcggacaatatgcatgttttcaatctaaagcgtca 31652556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 266
Target Start/End: Original strand, 31652636 - 31652725
Alignment:
Q  181 atcatgattttttctat----gcagatagcaattaaaatatttggaaaaatgctttatcgtcctgggacagattgtttaacagaatttcc 266  Q
    |||||||||||||||||    |||||| |||| | ||||||||||| ||||||||||| |||||  |||||||||| |||||||||||||    
T  31652636 atcatgattttttctattcatgcagatggcaaatcaaatatttggagaaatgctttattgtcctacgacagattgtataacagaatttcc 31652725  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 28887381 - 28887428
Alignment:
Q  44 atatatagacaccaatgataatttaagaaaatagtagtgattgaatgt 91  Q
    |||| ||||||||||| ||||||||||||||||| | |||||||||||    
T  28887381 atatgtagacaccaataataatttaagaaaatagaattgattgaatgt 28887428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 17105259 - 17105304
Alignment:
Q  48 atagacaccaatgataatttaagaaaatagtagtgattgaatgtaa 93  Q
    |||||||| ||| ||||||||||||||||  |||||||||||||||    
T  17105259 atagacactaataataatttaagaaaataaaagtgattgaatgtaa 17105304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 29236244 - 29236300
Alignment:
Q  37 aacactgatatatagacaccaatgataatttaagaaaatagtagtgattgaatgtaa 93  Q
    |||||| |||| ||||||| ||| ||||||| ||||||||| |||||||||||||||    
T  29236244 aacacttatatgtagacactaataataatttgagaaaatagaagtgattgaatgtaa 29236300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 94
Target Start/End: Original strand, 10338619 - 10338652
Alignment:
Q  61 ataatttaagaaaatagtagtgattgaatgtaat 94  Q
    ||||||||||||||||| ||||||||||||||||    
T  10338619 ataatttaagaaaatagaagtgattgaatgtaat 10338652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 12170590 - 12170632
Alignment:
Q  48 atagacaccaatgataatttaagaaaatagtagtgattgaatg 90  Q
    |||||||||||| ||||||||||||||||  ||||||||||||    
T  12170590 atagacaccaataataatttaagaaaataaaagtgattgaatg 12170632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 12415018 - 12415060
Alignment:
Q  48 atagacaccaatgataatttaagaaaatagtagtgattgaatg 90  Q
    |||||||||||| ||||||||||||||||  ||||||||||||    
T  12415018 atagacaccaataataatttaagaaaataaaagtgattgaatg 12415060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 28735862 - 28735820
Alignment:
Q  61 ataatttaagaaaatagtagtgattgaatgtaa-tatatgtgt 102  Q
    ||||||||||||||||| ||||||||||||||| |||||||||    
T  28735862 ataatttaagaaaatagaagtgattgaatgtaattatatgtgt 28735820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 16047747 - 16047687
Alignment:
Q  32 gacacaacactgatatatagacaccaatgataatttaagaaaatagtagtgattgaatgtaa 93  Q
    |||| |||||||| || | ||||||||| |||||||||| |||||| |||||||||||||||    
T  16047747 gacagaacactgacatgtggacaccaataataatttaag-aaatagaagtgattgaatgtaa 16047687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 93
Target Start/End: Original strand, 22556248 - 22556280
Alignment:
Q  61 ataatttaagaaaatagtagtgattgaatgtaa 93  Q
    ||||||||||||||||| |||||||||||||||    
T  22556248 ataatttaagaaaatagaagtgattgaatgtaa 22556280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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