View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10691_low_1 (Length: 584)
Name: NF10691_low_1
Description: NF10691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10691_low_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 550; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 9 - 566
Target Start/End: Complemental strand, 10992726 - 10992169
Alignment:
| Q |
9 |
agcacagaaaccgaccaatctaacaatattaacatgatgggttctaccaattgtaccaacttcattgaggaaatcttgcccgtttccttgagaaaaattt |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10992726 |
agcacagaaaccgaccaatctaacaatattaacatgatgggttctaccaattgtaccaacttcattgaggaaatcttgcccgtttccttgagaaaaattt |
10992627 |
T |
|
| Q |
109 |
agtatcttcacagcaacaatgatttcttttgaaatgcttcctctatatacagttccataggcaccttgtcctaacttgtcactaaagttatttgtgattc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10992626 |
agtatcttcacagcaacaatgatttcttttgaaatgcttcctctatatacagttccataggcaccttgtcctaacttgtcactaaagttatttgtgattc |
10992527 |
T |
|
| Q |
209 |
tcttaatttctacataagagtatctcgtgggtttaagagctctataatcttctaaaaacttttctataattgcttgttttgctttgttcagtatgtaaga |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10992526 |
tcttaatttctacataagagtatctcgtgggtttaagagctctataatcttctaaaaacttttctataattgcttgttttgctttgttcagtatgtaaga |
10992427 |
T |
|
| Q |
309 |
gtcataaacgtggtagactgcaccggttaacaagacaaaaaacagcgatcctagaattgatcctgcatttatgaaaactaatttaagaaaaatggtcatt |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
10992426 |
gtcataaacgtggtagactgcaccggttaacaagacaaaaaacagcgatcctagaattgatcctggatttatgaaaactaatttaagaaaaatggtaatt |
10992327 |
T |
|
| Q |
409 |
ttggcacaggttagaattaaaataaagcaaatttaaactcaaaagctgacctgtgttgactagagccgttgatgaacctacaaaatcatactagccaaac |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10992326 |
ttggcacaggttagaattaaaataaagcaaatttaaactcaaaagctgacctgtgttgactagagccgttgatgaacctacaaaatcatactagccaaac |
10992227 |
T |
|
| Q |
509 |
ttagtttatgtcattgattgattgtaaaagatacttaatgttaaagagtcccacatca |
566 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10992226 |
ttagtttatgtcattgattgattgtaaaagatacttaatgttaaagagtcccacatca |
10992169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 9 - 520
Target Start/End: Complemental strand, 10930522 - 10930011
Alignment:
| Q |
9 |
agcacagaaaccgaccaatctaacaatattaacatgatgggttctaccaattgtaccaacttcattgaggaaatcttgcccgtttccttgagaaaaattt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
10930522 |
agcacagaaaccgaccaatctaacaatattaacatgatggattctacccattgtaccaacttcattgaggaaatcttgcccgtttccttgtgaaacattt |
10930423 |
T |
|
| Q |
109 |
agtatcttcacagcaacaatgatttcttttgaaatgcttcctctatatacagttccataggcaccttgtcctaacttgtcactaaagttatttgtgattc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||| |
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|
| T |
10930422 |
agtatcttcacagcaacaatgatttcttttgaaatgcttcctctatatacagttccataggcaccttgtcctaacttgtcgccaaaattatttgtgattc |
10930323 |
T |
|
| Q |
209 |
tcttaatttctacataagagtatctcgtgggtttaagagctctataatcttctaaaaacttttctataattgcttgttttgctttgttcagtatgtaaga |
308 |
Q |
| |
|
| ||||||||| |||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||| || |||||||||| |
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|
| T |
10930322 |
ttttaatttcttcatatgagtatcttgtgggcttaagagctctataatcttctaaaaacttttctataatggcttgtttttctttcttttgtatgtaaga |
10930223 |
T |
|
| Q |
309 |
gtcataaacgtggtagactgcaccggttaacaagacaaaaaacagcgatcctagaattgatcctgcatttatgaaaactaatttaagaaaaatggtcatt |
408 |
Q |
| |
|
|||||||| ||||||| |||||| || |||||||||||||| | ||| |||| ||||||||||||||||||||||| |||||||||||||||| | ||| |
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|
| T |
10930222 |
gtcataaatatggtagattgcaccagtcaacaagacaaaaaataacgaacctaaaattgatcctgcatttatgaaaattaatttaagaaaaatgataatt |
10930123 |
T |
|
| Q |
409 |
ttggcacaggttagaattaaaataaagcaaatttaaactcaaaagctgacctgtgttgactagagccgttgatgaacctacaaaatcatactagccaaac |
508 |
Q |
| |
|
|| | || ||| ||||||||||||||||| ||||||| ||||||||||||||||||||||| | ||||| ||||||||||| ||||||| || | | |
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|
| T |
10930122 |
ttcatatagattaaaattaaaataaagcaaacttaaacttaaaagctgacctgtgttgactagggtagttgaagaacctacaaagtcatacttgcaagcc |
10930023 |
T |
|
| Q |
509 |
ttagtttatgtc |
520 |
Q |
| |
|
|||||||||||| |
|
|
| T |
10930022 |
ttagtttatgtc |
10930011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 543
Target Start/End: Complemental strand, 11040878 - 11040351
Alignment:
| Q |
16 |
aaaccgaccaatctaacaatattaacatgatgggttctaccaattgtaccaacttcattgaggaaatcttgcccgtttccttgagaaaaatttagtatct |
115 |
Q |
| |
|
||||||| ||| | ||||||||||||||| || ||||||| |||||||| |||||||| ||||| ||||| || ||||| ||||||| ||||||||||| |
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|
| T |
11040878 |
aaaccgatcaaacgaacaatattaacatggtgtattctacccattgtacccacttcatttaggaagtcttggccatttccctgagaaacatttagtatct |
11040779 |
T |
|
| Q |
116 |
tcacagcaacaatgatttcttttgaaatgcttcctctatatacagttccataggcaccttgtcctaacttgtcactaaagttatttgtgattctcttaat |
215 |
Q |
| |
|
||||||||||| | | ||||||||||||||||||| |||| |||||||||||||| |||||||||||| | || | || |||||||||||||||||||| |
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|
| T |
11040778 |
tcacagcaacactaaattcttttgaaatgcttcctttataaacagttccataggctccttgtcctaacatatccccgaaattatttgtgattctcttaat |
11040679 |
T |
|
| Q |
216 |
ttctacataagagtatctcgtgggtttaagagctctataatcttctaaaaacttttctataattgcttgttttgctttgttcagtatgtaagagtcataa |
315 |
Q |
| |
|
|||||||||||||||||| || || |||||||||||||| ||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||| |
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|
| T |
11040678 |
ttctacataagagtatctggttggcttaagagctctatagtcttctaaaaacttttctataattgcttgtttttctttccttagtatgtaagagtcataa |
11040579 |
T |
|
| Q |
316 |
acgtggtagactgcaccggttaacaagacaaaaaacagcgatcctagaattgatcctgcatttatgaaaactaatttaagaaaaatggtcattttggcac |
415 |
Q |
| |
|
| ||| ||||| |||| | ||||||| ||||||| |||||||| |||||||||||||||||||||| ||||||||||||||| | | ||||| || |
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|
| T |
11040578 |
atatggaagactccaccaatcaacaagatgaaaaacaacgatcctaaaattgatcctgcatttatgaaagctaatttaagaaaaacgataattttcttac |
11040479 |
T |
|
| Q |
416 |
aggttagaattaaaataaagcaaatttaaactcaaaagctgacctgtgttgactagagccgttgatgaacctacaaaatcatactagccaaacttagttt |
515 |
Q |
| |
|
| |||| |||||||| |||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||| || |||| || |
|
|
| T |
11040478 |
aagttataattaaaagaaagcaaatttaaacttaaaagctgacctgtgtttactagagcctttgatgaacctgcaaaatcatactagctaacattagctt |
11040379 |
T |
|
| Q |
516 |
atgtcattgattgattgtaaaagatact |
543 |
Q |
| |
|
|||| ||||||||||||||||||||||| |
|
|
| T |
11040378 |
atgttattgattgattgtaaaagatact |
11040351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 9 - 541
Target Start/End: Complemental strand, 11026182 - 11025649
Alignment:
| Q |
9 |
agcacagaaaccgaccaatctaacaatattaacatgatgggttctaccaattgtaccaacttcattgaggaaatcttgcccgtttccttgagaaaaattt |
108 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||| |||||| ||||||||||||||||| ||||| ||||| || ||||| ||||||| |||| |
|
|
| T |
11026182 |
agcacagaaaccgaccaatcggacaatattaacatggtggattctactcattgtaccaacttcatttaggaagtcttggccatttccctgagaaacattt |
11026083 |
T |
|
| Q |
109 |
agtatcttcacagcaacaatgatttcttttgaaatgcttcctctatatacagttccataggcaccttgtcctaacttgtcactaaagttatttgtgattc |
208 |
Q |
| |
|
|||||||||||||||||| | | ||||||||||||||||||| |||| |||||||||||||| |||||||||||| | || | || ||||||||||||| |
|
|
| T |
11026082 |
agtatcttcacagcaacactaaattcttttgaaatgcttcctttataaacagttccataggctccttgtcctaacatatccccgaaattatttgtgattc |
11025983 |
T |
|
| Q |
209 |
tcttaatttctacataagagtatctcgtgggtttaagagctctataatcttctaaaaacttttctataattgcttgttttgctttgttcagtatgtaaga |
308 |
Q |
| |
|
|||| |||||||||||||||||||| ||||| |||||| ||||||| ||||||||||||||||||| ||||||||||||| |||| || ||||||||||| |
|
|
| T |
11025982 |
tcttgatttctacataagagtatctggtgggcttaagaactctatagtcttctaaaaacttttctacaattgcttgtttttctttctttagtatgtaaga |
11025883 |
T |
|
| Q |
309 |
gtcataaacgtggtagactgcaccggttaacaagacaaaaaacagcgatcctagaattgatcctgcatttatgaaaactaatttaagaaaaatggtcatt |
408 |
Q |
| |
|
|||||||| ||||||| | |||| | ||||||| |||||||| ||||||| |||||||||||||||||||||| |||| |||||||||||| | ||| |
|
|
| T |
11025882 |
gtcataaatatggtagattccaccaatcaacaagataaaaaacaatgatcctaaaattgatcctgcatttatgaaagctaacttaagaaaaatgataatt |
11025783 |
T |
|
| Q |
409 |
ttggcacaggtt-agaattaaaataaagcaaatttaaactcaaaagctgacctgtgttgactagagccgttgatgaacctacaaaatcatactagccaaa |
507 |
Q |
| |
|
| ||||||| ||||| |||| |||||||||| |||| ||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||| | |
|
|
| T |
11025782 |
atcttacaggttaagaataaaaacgaagcaaatttgaacttaaaagctgacctgtgttcactagagcctttgatgaacctgcaaaatcatactagctagc |
11025683 |
T |
|
| Q |
508 |
cttagtttatgtcattgattgattgtaaaagata |
541 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||| |
|
|
| T |
11025682 |
cttagcttatgtcattgattgattgtaaaggata |
11025649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 295 - 517
Target Start/End: Complemental strand, 10991416 - 10991194
Alignment:
| Q |
295 |
ttcagtatgtaagagtcataaacgtggtagactgcaccggttaacaagacaaaaaacagcgatcctagaattgatcctgcatttatgaaaactaatttaa |
394 |
Q |
| |
|
||||| ||||||||||| |||| || ||||||||| |||| | ||||| |||||||| ||||||| |||||| |||||||||||||||| ||||||| |
|
|
| T |
10991416 |
ttcagaatgtaagagtcgtaaatatgatagactgcagcggtgagcaagataaaaaacattgatcctaaaattgaccctgcatttatgaaaaacaatttaa |
10991317 |
T |
|
| Q |
395 |
gaaaaatggtcattttggcacaggttagaattaaaataaagcaaatttaaactcaaaagctgacctgtgttgactagagccgttgatgaaccta-caaaa |
493 |
Q |
| |
|
||||| | ||||| ||| | || ||||||||||||| |||| | | | | |||||||||||||||||||| | |||||||||||||| |||| |
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|
| T |
10991316 |
-aaaaaaaatgattttcttacatgctataattaaaataaagaaaatacagaatgtatagctgacctgtgttgactagcgtcgttgatgaacctataaaaa |
10991218 |
T |
|
| Q |
494 |
tcatactagccaaacttagtttat |
517 |
Q |
| |
|
||| ||| || ||||| ||||||| |
|
|
| T |
10991217 |
tcaaacttgcaaaactcagtttat |
10991194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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