View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10691_low_18 (Length: 250)

Name: NF10691_low_18
Description: NF10691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10691_low_18
NF10691_low_18
[»] chr7 (4 HSPs)
chr7 (146-224)||(20073998-20074076)
chr7 (62-154)||(20074270-20074362)
chr7 (191-224)||(2440073-2440106)
chr7 (193-225)||(39262778-39262810)
[»] chr4 (2 HSPs)
chr4 (72-153)||(11655206-11655287)
chr4 (72-153)||(16033280-16033361)
[»] chr2 (2 HSPs)
chr2 (72-153)||(7393998-7394079)
chr2 (72-153)||(19583029-19583110)
[»] chr8 (4 HSPs)
chr8 (155-225)||(31206925-31206997)
chr8 (191-227)||(9885365-9885401)
chr8 (191-224)||(4970050-4970083)
chr8 (193-225)||(45239360-45239392)
[»] chr6 (1 HSPs)
chr6 (193-225)||(26846230-26846262)
[»] chr3 (3 HSPs)
chr3 (193-227)||(39482202-39482236)
chr3 (191-225)||(50719202-50719236)
chr3 (191-225)||(50793612-50793646)
[»] chr5 (2 HSPs)
chr5 (193-222)||(6702120-6702149)
chr5 (193-225)||(37340385-37340417)


Alignment Details
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 146 - 224
Target Start/End: Complemental strand, 20074076 - 20073998
Alignment:
Q  146 tttatttatatatggtatatcactttgcaacttgttttagtcgacatgacccgtgcggtgcacgggtcggcgttctagt 224  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  20074076 tttatttatatatggtatatcactttgcaagttgttttagtcgacatgacccgtgcggtgcacgggtcggcgttctagt 20073998  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 62 - 154
Target Start/End: Complemental strand, 20074362 - 20074270
Alignment:
Q  62 aaggagcttggcttagtgttaacttcaaaattaaatacaatagggctgacaagagtacttctgcacagcaatctaacaatcacatttatttat 154  Q
    ||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  20074362 aaggagcttggcttattgttaactttaaaattaaatataatagggctgacaagagtacttatgcacagtaatctaacaatcacatttatttat 20074270  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Original strand, 2440073 - 2440106
Alignment:
Q  191 atgacccgtgcggtgcacgggtcggcgttctagt 224  Q
    ||||||||||||| ||||||||||||||||||||    
T  2440073 atgacccgtgcggcgcacgggtcggcgttctagt 2440106  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 225
Target Start/End: Complemental strand, 39262810 - 39262778
Alignment:
Q  193 gacccgtgcggtgcacgggtcggcgttctagtt 225  Q
    ||||||||||| |||||||||||||||||||||    
T  39262810 gacccgtgcggcgcacgggtcggcgttctagtt 39262778  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 153
Target Start/End: Complemental strand, 11655287 - 11655206
Alignment:
Q  72 gcttagtgttaacttcaaaattaaatacaatagggctgacaagagtacttctgcacagcaatctaacaatcacatttattta 153  Q
    ||||| |||||||| ||||||||||||||||| |||| ||| ||||| |||||||||| ||| ||||| |||||||||||||    
T  11655287 gcttattgttaactgcaaaattaaatacaataaggctaacatgagtatttctgcacagtaatttaacagtcacatttattta 11655206  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 153
Target Start/End: Complemental strand, 16033361 - 16033280
Alignment:
Q  72 gcttagtgttaacttcaaaattaaatacaatagggctgacaagagtacttctgcacagcaatctaacaatcacatttattta 153  Q
    ||||| |||||||| ||||||||||||||||| |||| ||| ||||| |||||||||| ||| ||||| |||||||||||||    
T  16033361 gcttattgttaactgcaaaattaaatacaataaggctaacatgagtatttctgcacagtaatttaacagtcacatttattta 16033280  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 153
Target Start/End: Original strand, 7393998 - 7394079
Alignment:
Q  72 gcttagtgttaacttcaaaattaaatacaatagggctgacaagagtacttctgcacagcaatctaacaatcacatttattta 153  Q
    ||||| |||||||| ||||||||||||||||| |||| ||| ||||| |||||||||| ||| ||||| |||||||||||||    
T  7393998 gcttattgttaactgcaaaattaaatacaataaggctaacatgagtatttctgcacagtaatttaacagtcacatttattta 7394079  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 153
Target Start/End: Complemental strand, 19583110 - 19583029
Alignment:
Q  72 gcttagtgttaacttcaaaattaaatacaatagggctgacaagagtacttctgcacagcaatctaacaatcacatttattta 153  Q
    ||||| |||||||| ||||||||||||||||| |||| ||| ||||| |||||||||| ||| ||||| |||||||||||||    
T  19583110 gcttattgttaactgcaaaattaaatacaataaggctaacatgagtatttctgcacagtaatttaacagtcacatttattta 19583029  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 31206997 - 31206925
Alignment:
Q  155 atatggtatatcactttgcaacttgt--tttagtcgacatgacccgtgcggtgcacgggtcggcgttctagtt 225  Q
    ||||||||||||||||||||| ||||  |||||||||||| |||||| || ||||| || |||||||||||||    
T  31206997 atatggtatatcactttgcaagttgtgttttagtcgacataacccgtacgatgcacaggacggcgttctagtt 31206925  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 9885401 - 9885365
Alignment:
Q  191 atgacccgtgcggtgcacgggtcggcgttctagttaa 227  Q
    ||||||||||||| |||||||||||||||||||||||    
T  9885401 atgacccgtgcggcgcacgggtcggcgttctagttaa 9885365  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Original strand, 4970050 - 4970083
Alignment:
Q  191 atgacccgtgcggtgcacgggtcggcgttctagt 224  Q
    ||||||||||||| ||||||||||||||||||||    
T  4970050 atgacccgtgcggcgcacgggtcggcgttctagt 4970083  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 225
Target Start/End: Complemental strand, 45239392 - 45239360
Alignment:
Q  193 gacccgtgcggtgcacgggtcggcgttctagtt 225  Q
    ||||||||||| |||||||||||||||||||||    
T  45239392 gacccgtgcggcgcacgggtcggcgttctagtt 45239360  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 225
Target Start/End: Original strand, 26846230 - 26846262
Alignment:
Q  193 gacccgtgcggtgcacgggtcggcgttctagtt 225  Q
    |||||||||||||||||||||||||||||||||    
T  26846230 gacccgtgcggtgcacgggtcggcgttctagtt 26846262  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 227
Target Start/End: Complemental strand, 39482236 - 39482202
Alignment:
Q  193 gacccgtgcggtgcacgggtcggcgttctagttaa 227  Q
    |||||||||| ||||||||||||||||||||||||    
T  39482236 gacccgtgcgatgcacgggtcggcgttctagttaa 39482202  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 225
Target Start/End: Original strand, 50719202 - 50719236
Alignment:
Q  191 atgacccgtgcggtgcacgggtcggcgttctagtt 225  Q
    ||||||||||||| |||||||||||||||||||||    
T  50719202 atgacccgtgcggcgcacgggtcggcgttctagtt 50719236  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 225
Target Start/End: Complemental strand, 50793646 - 50793612
Alignment:
Q  191 atgacccgtgcggtgcacgggtcggcgttctagtt 225  Q
    ||||||||||||| |||||||||||||||||||||    
T  50793646 atgacccgtgcggcgcacgggtcggcgttctagtt 50793612  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 222
Target Start/End: Original strand, 6702120 - 6702149
Alignment:
Q  193 gacccgtgcggtgcacgggtcggcgttcta 222  Q
    ||||||||||||||||||||||||||||||    
T  6702120 gacccgtgcggtgcacgggtcggcgttcta 6702149  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 225
Target Start/End: Original strand, 37340385 - 37340417
Alignment:
Q  193 gacccgtgcggtgcacgggtcggcgttctagtt 225  Q
    ||||||||||| |||||||||||||||||||||    
T  37340385 gacccgtgcggggcacgggtcggcgttctagtt 37340417  T

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