View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10691_low_23 (Length: 237)
Name: NF10691_low_23
Description: NF10691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10691_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 10 - 221
Target Start/End: Original strand, 45106583 - 45106794
Alignment:
| Q |
10 |
gagagatgaaaatgggtgaagcccttccggctaactcgattaaatgcaaggcatctacggtgacaggatattctactatagggtcacatagatcaattac |
109 |
Q |
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| T |
45106583 |
gagaaatgaaaatgggtgaagcccttccggctaactcgattaaatgcaaggcatctacggtgacaggatattctactatagggtcacatagatcaattac |
45106682 |
T |
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| Q |
110 |
ttcagtcataggagttatgtggtgtggtttatgaatgcaaactagtatcttcagttctgagtcgggtttcaaactgaatatgttcctcttttggtagcca |
209 |
Q |
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| T |
45106683 |
ttcagtcataggagttatgtggtgtggtttatgaatgcaaactagtatcttcagttctgagtcgggtttcaaactgaatatgttcctcttttggtagcca |
45106782 |
T |
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| Q |
210 |
gcatatttcctt |
221 |
Q |
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| T |
45106783 |
gcatatttcctt |
45106794 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 5623559 - 5623502
Alignment:
| Q |
160 |
tcagttctgagtcgggtttcaaactgaatatgttcctcttttggtagccagcatattt |
217 |
Q |
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| T |
5623559 |
tcagttctgcgtcgggttttaaactcatgatgttccttttttggtagccggcatattt |
5623502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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